Hb_002194_080

Information

Type -
Description -
Location Contig2194: 33051-35887
Sequence    

Annotation

kegg
ID vvi:100246468
description riboflavin biosynthesis protein PYRD, chloroplastic
nr
ID XP_012083408.1
description PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
swissprot
ID Q8GWP5
description Riboflavin biosynthesis protein PYRD, chloroplastic OS=Arabidopsis thaliana GN=PYRD PE=1 SV=1
trembl
ID M5XGG9
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020208mg PE=4 SV=1
Gene Ontology
ID GO:0008270
description riboflavin biosynthesis protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002194_080 0.0 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
2 Hb_004449_190 0.1696144577 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
3 Hb_002352_040 0.2812162308 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
4 Hb_004413_040 0.3352128937 - - -
5 Hb_005489_030 0.3663227118 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
6 Hb_000377_100 0.3672204912 - - LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like protein [Theobroma cacao]
7 Hb_007777_020 0.3709284746 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
8 Hb_019715_020 0.371339503 - - -
9 Hb_000065_070 0.3738233587 - - hypothetical protein CISIN_1g039077mg [Citrus sinensis]
10 Hb_000529_100 0.3739723772 - - hypothetical protein POPTR_0009s05980g [Populus trichocarpa]
11 Hb_001021_180 0.3754203747 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Nicotiana tomentosiformis]
12 Hb_105061_010 0.3765833864 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_000742_080 0.3773427836 - - -
14 Hb_000344_060 0.3776991795 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
15 Hb_001105_190 0.3782079468 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
16 Hb_004931_080 0.3831248867 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Jatropha curcas]
17 Hb_036790_130 0.384927432 - - -
18 Hb_000608_060 0.385198145 - - -
19 Hb_001999_270 0.3872764632 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
20 Hb_002998_050 0.3881707652 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Sesamum indicum]

Gene co-expression network

sample Hb_002194_080 Hb_002194_080 Hb_004449_190 Hb_004449_190 Hb_002194_080--Hb_004449_190 Hb_002352_040 Hb_002352_040 Hb_002194_080--Hb_002352_040 Hb_004413_040 Hb_004413_040 Hb_002194_080--Hb_004413_040 Hb_005489_030 Hb_005489_030 Hb_002194_080--Hb_005489_030 Hb_000377_100 Hb_000377_100 Hb_002194_080--Hb_000377_100 Hb_007777_020 Hb_007777_020 Hb_002194_080--Hb_007777_020 Hb_004449_190--Hb_002352_040 Hb_000608_060 Hb_000608_060 Hb_004449_190--Hb_000608_060 Hb_001711_070 Hb_001711_070 Hb_004449_190--Hb_001711_070 Hb_004931_080 Hb_004931_080 Hb_004449_190--Hb_004931_080 Hb_004449_190--Hb_007777_020 Hb_056531_040 Hb_056531_040 Hb_002352_040--Hb_056531_040 Hb_072775_010 Hb_072775_010 Hb_002352_040--Hb_072775_010 Hb_086287_020 Hb_086287_020 Hb_002352_040--Hb_086287_020 Hb_071923_010 Hb_071923_010 Hb_002352_040--Hb_071923_010 Hb_105061_010 Hb_105061_010 Hb_004413_040--Hb_105061_010 Hb_106159_010 Hb_106159_010 Hb_004413_040--Hb_106159_010 Hb_001722_030 Hb_001722_030 Hb_004413_040--Hb_001722_030 Hb_063716_060 Hb_063716_060 Hb_004413_040--Hb_063716_060 Hb_000002_320 Hb_000002_320 Hb_004413_040--Hb_000002_320 Hb_001431_110 Hb_001431_110 Hb_005489_030--Hb_001431_110 Hb_001016_010 Hb_001016_010 Hb_005489_030--Hb_001016_010 Hb_127743_020 Hb_127743_020 Hb_005489_030--Hb_127743_020 Hb_001999_270 Hb_001999_270 Hb_005489_030--Hb_001999_270 Hb_006831_060 Hb_006831_060 Hb_005489_030--Hb_006831_060 Hb_004545_020 Hb_004545_020 Hb_005489_030--Hb_004545_020 Hb_000212_480 Hb_000212_480 Hb_000377_100--Hb_000212_480 Hb_009083_040 Hb_009083_040 Hb_000377_100--Hb_009083_040 Hb_048110_010 Hb_048110_010 Hb_000377_100--Hb_048110_010 Hb_000377_100--Hb_004449_190 Hb_000377_100--Hb_002352_040 Hb_031866_060 Hb_031866_060 Hb_007777_020--Hb_031866_060 Hb_033642_100 Hb_033642_100 Hb_007777_020--Hb_033642_100 Hb_000866_420 Hb_000866_420 Hb_007777_020--Hb_000866_420 Hb_041392_010 Hb_041392_010 Hb_007777_020--Hb_041392_010 Hb_012132_040 Hb_012132_040 Hb_007777_020--Hb_012132_040 Hb_000159_110 Hb_000159_110 Hb_007777_020--Hb_000159_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0583139 0 0.0605782 0 0.0242632 0.112715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118814 0 0 0.0377007 0

CAGE analysis