Hb_001711_070

Information

Type -
Description -
Location Contig1711: 48468-58742
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001711_070 0.0 - - -
2 Hb_074701_010 0.2495509739 - - -
3 Hb_001023_020 0.2992934047 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
4 Hb_004429_030 0.3160229516 - - hypothetical protein POPTR_0010s16560g [Populus trichocarpa]
5 Hb_007218_090 0.3185605549 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
6 Hb_008887_010 0.3283318598 - - -
7 Hb_000219_070 0.328908736 - - -
8 Hb_152439_010 0.3431000641 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
9 Hb_000608_060 0.3436372236 - - -
10 Hb_004449_190 0.348598514 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
11 Hb_003238_030 0.3499246442 - - hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
12 Hb_002259_040 0.3507783276 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_000922_440 0.3539888241 - - -
14 Hb_111834_010 0.354711468 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
15 Hb_000953_060 0.3547379695 - - PREDICTED: putative phytosulfokines 6 [Vitis vinifera]
16 Hb_034667_020 0.3553995525 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005883_040 0.3557897962 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
18 Hb_002333_030 0.3572887799 - - -
19 Hb_080530_020 0.3587711595 - - -
20 Hb_037793_010 0.3599366926 - - PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001711_070 Hb_001711_070 Hb_074701_010 Hb_074701_010 Hb_001711_070--Hb_074701_010 Hb_001023_020 Hb_001023_020 Hb_001711_070--Hb_001023_020 Hb_004429_030 Hb_004429_030 Hb_001711_070--Hb_004429_030 Hb_007218_090 Hb_007218_090 Hb_001711_070--Hb_007218_090 Hb_008887_010 Hb_008887_010 Hb_001711_070--Hb_008887_010 Hb_000219_070 Hb_000219_070 Hb_001711_070--Hb_000219_070 Hb_074701_010--Hb_004429_030 Hb_057746_010 Hb_057746_010 Hb_074701_010--Hb_057746_010 Hb_111834_010 Hb_111834_010 Hb_074701_010--Hb_111834_010 Hb_074701_010--Hb_001023_020 Hb_065395_010 Hb_065395_010 Hb_074701_010--Hb_065395_010 Hb_001023_020--Hb_057746_010 Hb_000002_320 Hb_000002_320 Hb_001023_020--Hb_000002_320 Hb_034667_020 Hb_034667_020 Hb_001023_020--Hb_034667_020 Hb_007827_020 Hb_007827_020 Hb_001023_020--Hb_007827_020 Hb_114261_010 Hb_114261_010 Hb_001023_020--Hb_114261_010 Hb_000270_500 Hb_000270_500 Hb_001023_020--Hb_000270_500 Hb_000252_250 Hb_000252_250 Hb_004429_030--Hb_000252_250 Hb_004429_030--Hb_114261_010 Hb_010317_030 Hb_010317_030 Hb_004429_030--Hb_010317_030 Hb_004429_030--Hb_001023_020 Hb_004429_030--Hb_000270_500 Hb_007218_090--Hb_008887_010 Hb_011179_040 Hb_011179_040 Hb_007218_090--Hb_011179_040 Hb_182310_010 Hb_182310_010 Hb_007218_090--Hb_182310_010 Hb_001241_040 Hb_001241_040 Hb_007218_090--Hb_001241_040 Hb_000563_280 Hb_000563_280 Hb_007218_090--Hb_000563_280 Hb_067345_050 Hb_067345_050 Hb_007218_090--Hb_067345_050 Hb_008887_010--Hb_011179_040 Hb_075570_010 Hb_075570_010 Hb_008887_010--Hb_075570_010 Hb_001935_180 Hb_001935_180 Hb_008887_010--Hb_001935_180 Hb_000007_310 Hb_000007_310 Hb_008887_010--Hb_000007_310 Hb_027998_030 Hb_027998_030 Hb_008887_010--Hb_027998_030 Hb_000922_440 Hb_000922_440 Hb_000219_070--Hb_000922_440 Hb_184629_010 Hb_184629_010 Hb_000219_070--Hb_184629_010 Hb_000493_020 Hb_000493_020 Hb_000219_070--Hb_000493_020 Hb_063716_060 Hb_063716_060 Hb_000219_070--Hb_063716_060 Hb_040779_010 Hb_040779_010 Hb_000219_070--Hb_040779_010 Hb_006960_030 Hb_006960_030 Hb_000219_070--Hb_006960_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.214217 0 0.146048 0 0.118384 0.47672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.223525 0

CAGE analysis