Hb_106159_010

Information

Type -
Description -
Location Contig106159: 44-316
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106159_010 0.0 - - -
2 Hb_001722_030 0.1874804421 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105123768 isoform X2 [Populus euphratica]
3 Hb_011401_010 0.2074619595 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
4 Hb_002231_050 0.2699430196 - - -
5 Hb_004413_040 0.2841541345 - - -
6 Hb_002205_200 0.2846903397 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
7 Hb_000875_100 0.316413525 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
8 Hb_121031_010 0.3245867874 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
9 Hb_034050_010 0.3270202138 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
10 Hb_144101_010 0.3277627408 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
11 Hb_001014_200 0.335364363 - - -
12 Hb_004162_300 0.3486286005 - - monovalent cation:proton antiporter, putative [Ricinus communis]
13 Hb_027014_010 0.3518226848 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
14 Hb_002352_040 0.3532288376 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
15 Hb_001544_020 0.3574834891 - - -
16 Hb_002135_040 0.3584197244 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
17 Hb_002928_100 0.3590176957 - - -
18 Hb_000931_030 0.3598681541 - - PREDICTED: uncharacterized protein LOC105130278 [Populus euphratica]
19 Hb_029162_020 0.3604116606 - - -
20 Hb_166548_010 0.3646303447 - - hypothetical protein JCGZ_09681 [Jatropha curcas]

Gene co-expression network

sample Hb_106159_010 Hb_106159_010 Hb_001722_030 Hb_001722_030 Hb_106159_010--Hb_001722_030 Hb_011401_010 Hb_011401_010 Hb_106159_010--Hb_011401_010 Hb_002231_050 Hb_002231_050 Hb_106159_010--Hb_002231_050 Hb_004413_040 Hb_004413_040 Hb_106159_010--Hb_004413_040 Hb_002205_200 Hb_002205_200 Hb_106159_010--Hb_002205_200 Hb_000875_100 Hb_000875_100 Hb_106159_010--Hb_000875_100 Hb_001722_030--Hb_011401_010 Hb_001722_030--Hb_002231_050 Hb_002928_100 Hb_002928_100 Hb_001722_030--Hb_002928_100 Hb_007792_010 Hb_007792_010 Hb_001722_030--Hb_007792_010 Hb_001722_030--Hb_002205_200 Hb_011401_010--Hb_002231_050 Hb_011401_010--Hb_002928_100 Hb_011401_010--Hb_007792_010 Hb_115784_010 Hb_115784_010 Hb_011401_010--Hb_115784_010 Hb_002231_050--Hb_007792_010 Hb_002231_050--Hb_002928_100 Hb_002231_050--Hb_115784_010 Hb_105061_010 Hb_105061_010 Hb_004413_040--Hb_105061_010 Hb_004413_040--Hb_001722_030 Hb_063716_060 Hb_063716_060 Hb_004413_040--Hb_063716_060 Hb_002194_080 Hb_002194_080 Hb_004413_040--Hb_002194_080 Hb_000002_320 Hb_000002_320 Hb_004413_040--Hb_000002_320 Hb_036285_010 Hb_036285_010 Hb_002205_200--Hb_036285_010 Hb_162999_010 Hb_162999_010 Hb_002205_200--Hb_162999_010 Hb_174107_010 Hb_174107_010 Hb_002205_200--Hb_174107_010 Hb_010588_010 Hb_010588_010 Hb_002205_200--Hb_010588_010 Hb_030765_010 Hb_030765_010 Hb_002205_200--Hb_030765_010 Hb_001095_060 Hb_001095_060 Hb_002205_200--Hb_001095_060 Hb_121031_010 Hb_121031_010 Hb_000875_100--Hb_121031_010 Hb_034050_010 Hb_034050_010 Hb_000875_100--Hb_034050_010 Hb_001014_200 Hb_001014_200 Hb_000875_100--Hb_001014_200 Hb_004162_300 Hb_004162_300 Hb_000875_100--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_000875_100--Hb_027014_010 Hb_163115_010 Hb_163115_010 Hb_000875_100--Hb_163115_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.293895 0 0 0 0 0.805458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.481301 0 0 0 0

CAGE analysis