Hb_011401_010

Information

Type -
Description -
Location Contig11401: 20715-21131
Sequence    

Annotation

kegg
ID sly:104647507
description uncharacterized LOC104647507
nr
ID XP_010321238.1
description PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC104648300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011401_010 0.0 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
2 Hb_002231_050 0.0653555118 - - -
3 Hb_001722_030 0.0725558379 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105123768 isoform X2 [Populus euphratica]
4 Hb_106159_010 0.2074619595 - - -
5 Hb_002928_100 0.3131874741 - - -
6 Hb_007792_010 0.3173549425 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
7 Hb_115784_010 0.3176525085 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
8 Hb_002205_200 0.3298969824 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
9 Hb_183366_010 0.3409954964 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
10 Hb_163115_010 0.3416905156 - - -
11 Hb_001809_040 0.3417402836 - - PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]
12 Hb_000599_060 0.3433556879 - - PREDICTED: legumin A-like [Jatropha curcas]
13 Hb_027014_010 0.3464865684 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
14 Hb_004532_010 0.3475296088 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
15 Hb_004162_300 0.3479029637 - - monovalent cation:proton antiporter, putative [Ricinus communis]
16 Hb_004413_040 0.3608538659 - - -
17 Hb_034050_010 0.3656958389 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
18 Hb_012193_020 0.3690209887 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
19 Hb_121031_010 0.3693948197 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
20 Hb_010128_110 0.3768672162 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]

Gene co-expression network

sample Hb_011401_010 Hb_011401_010 Hb_002231_050 Hb_002231_050 Hb_011401_010--Hb_002231_050 Hb_001722_030 Hb_001722_030 Hb_011401_010--Hb_001722_030 Hb_106159_010 Hb_106159_010 Hb_011401_010--Hb_106159_010 Hb_002928_100 Hb_002928_100 Hb_011401_010--Hb_002928_100 Hb_007792_010 Hb_007792_010 Hb_011401_010--Hb_007792_010 Hb_115784_010 Hb_115784_010 Hb_011401_010--Hb_115784_010 Hb_002231_050--Hb_001722_030 Hb_002231_050--Hb_106159_010 Hb_002231_050--Hb_007792_010 Hb_002231_050--Hb_002928_100 Hb_002231_050--Hb_115784_010 Hb_001722_030--Hb_106159_010 Hb_001722_030--Hb_002928_100 Hb_001722_030--Hb_007792_010 Hb_002205_200 Hb_002205_200 Hb_001722_030--Hb_002205_200 Hb_004413_040 Hb_004413_040 Hb_106159_010--Hb_004413_040 Hb_106159_010--Hb_002205_200 Hb_000875_100 Hb_000875_100 Hb_106159_010--Hb_000875_100 Hb_048610_010 Hb_048610_010 Hb_002928_100--Hb_048610_010 Hb_026766_010 Hb_026766_010 Hb_002928_100--Hb_026766_010 Hb_029162_020 Hb_029162_020 Hb_002928_100--Hb_029162_020 Hb_002094_020 Hb_002094_020 Hb_002928_100--Hb_002094_020 Hb_005539_300 Hb_005539_300 Hb_002928_100--Hb_005539_300 Hb_001741_050 Hb_001741_050 Hb_007792_010--Hb_001741_050 Hb_153231_040 Hb_153231_040 Hb_007792_010--Hb_153231_040 Hb_002307_130 Hb_002307_130 Hb_007792_010--Hb_002307_130 Hb_005496_060 Hb_005496_060 Hb_007792_010--Hb_005496_060 Hb_001195_590 Hb_001195_590 Hb_007792_010--Hb_001195_590 Hb_070820_010 Hb_070820_010 Hb_115784_010--Hb_070820_010 Hb_000086_330 Hb_000086_330 Hb_115784_010--Hb_000086_330 Hb_141383_010 Hb_141383_010 Hb_115784_010--Hb_141383_010 Hb_002301_240 Hb_002301_240 Hb_115784_010--Hb_002301_240 Hb_000931_030 Hb_000931_030 Hb_115784_010--Hb_000931_030 Hb_004732_010 Hb_004732_010 Hb_115784_010--Hb_004732_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15579 0 0 0 0 0.20483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.368416 0 0 0 0

CAGE analysis