Hb_153231_040

Information

Type -
Description -
Location Contig153231: 15953-16219
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153231_040 0.0 - - -
2 Hb_010504_010 0.1204869667 - - 40S ribosomal protein S15C [Hevea brasiliensis]
3 Hb_022212_010 0.1436860466 - - -
4 Hb_002239_010 0.1889715063 - - -
5 Hb_000350_110 0.2795621826 - - PREDICTED: uncharacterized protein LOC104220461 isoform X2 [Nicotiana sylvestris]
6 Hb_001863_060 0.2873380527 - - PIF-like transposase [Daucus carota]
7 Hb_007792_010 0.2998104276 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
8 Hb_002307_130 0.3323384736 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008880_010 0.3545515669 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 isoform X2 [Nelumbo nucifera]
10 Hb_061390_010 0.3545523134 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
11 Hb_115350_010 0.3545643635 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
12 Hb_002779_020 0.3545689918 - - transcription factor, putative [Ricinus communis]
13 Hb_136696_010 0.3545789158 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_068804_160 0.3549409973 transcription factor TF Family: MIKC hypothetical protein JCGZ_12632 [Jatropha curcas]
15 Hb_001265_010 0.3560824721 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
16 Hb_048125_010 0.3609903668 - - PREDICTED: uncharacterized protein LOC104104928 [Nicotiana tomentosiformis]
17 Hb_019677_010 0.3609986267 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
18 Hb_000058_220 0.3610008642 - - hypothetical protein, partial [Staphylococcus aureus]
19 Hb_012522_020 0.3610038901 - - -
20 Hb_001831_020 0.3610090061 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]

Gene co-expression network

sample Hb_153231_040 Hb_153231_040 Hb_010504_010 Hb_010504_010 Hb_153231_040--Hb_010504_010 Hb_022212_010 Hb_022212_010 Hb_153231_040--Hb_022212_010 Hb_002239_010 Hb_002239_010 Hb_153231_040--Hb_002239_010 Hb_000350_110 Hb_000350_110 Hb_153231_040--Hb_000350_110 Hb_001863_060 Hb_001863_060 Hb_153231_040--Hb_001863_060 Hb_007792_010 Hb_007792_010 Hb_153231_040--Hb_007792_010 Hb_010504_010--Hb_002239_010 Hb_010504_010--Hb_022212_010 Hb_002307_130 Hb_002307_130 Hb_010504_010--Hb_002307_130 Hb_010504_010--Hb_000350_110 Hb_004304_050 Hb_004304_050 Hb_010504_010--Hb_004304_050 Hb_076693_010 Hb_076693_010 Hb_022212_010--Hb_076693_010 Hb_011707_010 Hb_011707_010 Hb_022212_010--Hb_011707_010 Hb_092027_010 Hb_092027_010 Hb_022212_010--Hb_092027_010 Hb_008031_020 Hb_008031_020 Hb_022212_010--Hb_008031_020 Hb_001831_020 Hb_001831_020 Hb_022212_010--Hb_001831_020 Hb_000281_210 Hb_000281_210 Hb_002239_010--Hb_000281_210 Hb_002239_010--Hb_022212_010 Hb_000088_060 Hb_000088_060 Hb_002239_010--Hb_000088_060 Hb_002239_010--Hb_002307_130 Hb_000350_110--Hb_001863_060 Hb_000350_110--Hb_002307_130 Hb_000350_110--Hb_022212_010 Hb_148908_020 Hb_148908_020 Hb_000350_110--Hb_148908_020 Hb_009777_010 Hb_009777_010 Hb_001863_060--Hb_009777_010 Hb_001863_060--Hb_022212_010 Hb_004297_060 Hb_004297_060 Hb_001863_060--Hb_004297_060 Hb_001863_060--Hb_148908_020 Hb_001741_050 Hb_001741_050 Hb_007792_010--Hb_001741_050 Hb_002231_050 Hb_002231_050 Hb_007792_010--Hb_002231_050 Hb_007792_010--Hb_002307_130 Hb_005496_060 Hb_005496_060 Hb_007792_010--Hb_005496_060 Hb_001195_590 Hb_001195_590 Hb_007792_010--Hb_001195_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221277 0 0 0 0.228648 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.5129 0 0 0 0

CAGE analysis