Hb_000281_210

Information

Type -
Description -
Location Contig281: 238960-240603
Sequence    

Annotation

kegg
ID pda:103698823
description probable lysine--tRNA ligase, cytoplasmic
nr
ID -
description -
swissprot
ID -
description -
trembl
ID M1D5C5
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400032166 PE=3 SV=1
Gene Ontology
ID GO:0008152
description probable lysine--trna cytoplasmic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29362: 240537-240871 , PASA_asmbl_29365: 239676-267966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000281_210 0.0 - - -
2 Hb_001364_020 0.2277077203 - - -
3 Hb_005867_010 0.2278656107 - - -
4 Hb_000038_160 0.2322499417 - - putative gag protein [Coffea canephora]
5 Hb_140049_070 0.2324523426 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000008_050 0.2324866747 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
7 Hb_002805_320 0.2332663998 - - -
8 Hb_002163_060 0.2361592325 - - -
9 Hb_002239_010 0.2436507397 - - -
10 Hb_027393_020 0.2670117204 - - -
11 Hb_004324_380 0.2732115286 - - -
12 Hb_000375_380 0.2750764954 - - -
13 Hb_011978_010 0.2752709404 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
14 Hb_000100_050 0.2756717594 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
15 Hb_007008_020 0.289962916 - - -
16 Hb_000739_090 0.2990515602 - - -
17 Hb_046727_010 0.3025081644 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_080765_020 0.304530051 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_052761_010 0.3087173884 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
20 Hb_000362_240 0.310362268 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000281_210 Hb_000281_210 Hb_001364_020 Hb_001364_020 Hb_000281_210--Hb_001364_020 Hb_005867_010 Hb_005867_010 Hb_000281_210--Hb_005867_010 Hb_000038_160 Hb_000038_160 Hb_000281_210--Hb_000038_160 Hb_140049_070 Hb_140049_070 Hb_000281_210--Hb_140049_070 Hb_000008_050 Hb_000008_050 Hb_000281_210--Hb_000008_050 Hb_002805_320 Hb_002805_320 Hb_000281_210--Hb_002805_320 Hb_001364_020--Hb_005867_010 Hb_001364_020--Hb_000038_160 Hb_001364_020--Hb_140049_070 Hb_001364_020--Hb_002805_320 Hb_002163_060 Hb_002163_060 Hb_001364_020--Hb_002163_060 Hb_027393_020 Hb_027393_020 Hb_001364_020--Hb_027393_020 Hb_005867_010--Hb_000038_160 Hb_005867_010--Hb_140049_070 Hb_005867_010--Hb_002805_320 Hb_005867_010--Hb_002163_060 Hb_005867_010--Hb_027393_020 Hb_000038_160--Hb_140049_070 Hb_000038_160--Hb_002805_320 Hb_000038_160--Hb_002163_060 Hb_000038_160--Hb_027393_020 Hb_140049_070--Hb_002805_320 Hb_140049_070--Hb_002163_060 Hb_140049_070--Hb_027393_020 Hb_000008_050--Hb_001364_020 Hb_000362_240 Hb_000362_240 Hb_000008_050--Hb_000362_240 Hb_000008_050--Hb_005867_010 Hb_059126_010 Hb_059126_010 Hb_000008_050--Hb_059126_010 Hb_000008_050--Hb_000038_160 Hb_000008_050--Hb_140049_070 Hb_002805_320--Hb_002163_060 Hb_002805_320--Hb_027393_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82395 0 0 0 5.69942 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.946097 0 0 0 0

CAGE analysis