Hb_002239_010

Information

Type -
Description -
Location Contig2239: 1304-1987
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002239_010 0.0 - - -
2 Hb_010504_010 0.1190498744 - - 40S ribosomal protein S15C [Hevea brasiliensis]
3 Hb_153231_040 0.1889715063 - - -
4 Hb_000281_210 0.2436507397 - - -
5 Hb_022212_010 0.2939535698 - - -
6 Hb_000088_060 0.3132488494 - - -
7 Hb_002307_130 0.3165681197 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001863_060 0.3205242172 - - PIF-like transposase [Daucus carota]
9 Hb_000350_110 0.3354883969 - - PREDICTED: uncharacterized protein LOC104220461 isoform X2 [Nicotiana sylvestris]
10 Hb_007792_010 0.349380349 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
11 Hb_001195_590 0.3705114194 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
12 Hb_009777_010 0.3882107187 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
13 Hb_000538_150 0.3894763568 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
14 Hb_006735_040 0.3954823202 - - unnamed protein product [Vitis vinifera]
15 Hb_001265_010 0.39677037 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
16 Hb_089140_080 0.3969467912 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
17 Hb_001828_010 0.3996352804 - - -
18 Hb_003918_040 0.3998332831 - - -
19 Hb_005183_160 0.4008943155 - - -
20 Hb_004304_050 0.4016903624 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]

Gene co-expression network

sample Hb_002239_010 Hb_002239_010 Hb_010504_010 Hb_010504_010 Hb_002239_010--Hb_010504_010 Hb_153231_040 Hb_153231_040 Hb_002239_010--Hb_153231_040 Hb_000281_210 Hb_000281_210 Hb_002239_010--Hb_000281_210 Hb_022212_010 Hb_022212_010 Hb_002239_010--Hb_022212_010 Hb_000088_060 Hb_000088_060 Hb_002239_010--Hb_000088_060 Hb_002307_130 Hb_002307_130 Hb_002239_010--Hb_002307_130 Hb_010504_010--Hb_153231_040 Hb_010504_010--Hb_022212_010 Hb_010504_010--Hb_002307_130 Hb_000350_110 Hb_000350_110 Hb_010504_010--Hb_000350_110 Hb_004304_050 Hb_004304_050 Hb_010504_010--Hb_004304_050 Hb_153231_040--Hb_022212_010 Hb_153231_040--Hb_000350_110 Hb_001863_060 Hb_001863_060 Hb_153231_040--Hb_001863_060 Hb_007792_010 Hb_007792_010 Hb_153231_040--Hb_007792_010 Hb_001364_020 Hb_001364_020 Hb_000281_210--Hb_001364_020 Hb_005867_010 Hb_005867_010 Hb_000281_210--Hb_005867_010 Hb_000038_160 Hb_000038_160 Hb_000281_210--Hb_000038_160 Hb_140049_070 Hb_140049_070 Hb_000281_210--Hb_140049_070 Hb_000008_050 Hb_000008_050 Hb_000281_210--Hb_000008_050 Hb_002805_320 Hb_002805_320 Hb_000281_210--Hb_002805_320 Hb_076693_010 Hb_076693_010 Hb_022212_010--Hb_076693_010 Hb_011707_010 Hb_011707_010 Hb_022212_010--Hb_011707_010 Hb_092027_010 Hb_092027_010 Hb_022212_010--Hb_092027_010 Hb_008031_020 Hb_008031_020 Hb_022212_010--Hb_008031_020 Hb_001831_020 Hb_001831_020 Hb_022212_010--Hb_001831_020 Hb_006557_010 Hb_006557_010 Hb_000088_060--Hb_006557_010 Hb_001195_590 Hb_001195_590 Hb_000088_060--Hb_001195_590 Hb_006735_040 Hb_006735_040 Hb_000088_060--Hb_006735_040 Hb_080083_010 Hb_080083_010 Hb_000088_060--Hb_080083_010 Hb_004092_010 Hb_004092_010 Hb_000088_060--Hb_004092_010 Hb_005057_010 Hb_005057_010 Hb_000088_060--Hb_005057_010 Hb_002307_130--Hb_000350_110 Hb_040562_010 Hb_040562_010 Hb_002307_130--Hb_040562_010 Hb_003108_010 Hb_003108_010 Hb_002307_130--Hb_003108_010 Hb_002307_130--Hb_007792_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0853334 0 0 0 0.123084 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0990114 0 0 0 0

CAGE analysis