Hb_004304_050

Information

Type -
Description -
Location Contig4304: 103585-107773
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_012073065.1
description PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A5BA10
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009489 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004304_050 0.0 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
2 Hb_005183_160 0.0044960528 - - -
3 Hb_003918_040 0.0108823621 - - -
4 Hb_008880_010 0.1279927977 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 isoform X2 [Nelumbo nucifera]
5 Hb_061390_010 0.128121542 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
6 Hb_115350_010 0.1296535497 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
7 Hb_002779_020 0.1301015465 - - transcription factor, putative [Ricinus communis]
8 Hb_136696_010 0.1309336979 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_068804_160 0.1435487255 transcription factor TF Family: MIKC hypothetical protein JCGZ_12632 [Jatropha curcas]
10 Hb_000215_170 0.27597036 - - PREDICTED: uncharacterized protein LOC102596491 [Solanum tuberosum]
11 Hb_001798_050 0.309971198 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
12 Hb_010504_010 0.3168360886 - - 40S ribosomal protein S15C [Hevea brasiliensis]
13 Hb_001824_060 0.3244264703 - - -
14 Hb_000011_170 0.3376407208 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
15 Hb_002307_130 0.3705734781 - - conserved hypothetical protein [Ricinus communis]
16 Hb_153231_040 0.3733823212 - - -
17 Hb_004147_040 0.383539376 - - hypothetical protein JCGZ_15918 [Jatropha curcas]
18 Hb_004631_120 0.3994513751 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002239_010 0.4016903624 - - -
20 Hb_001787_040 0.4123945174 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_004304_050 Hb_004304_050 Hb_005183_160 Hb_005183_160 Hb_004304_050--Hb_005183_160 Hb_003918_040 Hb_003918_040 Hb_004304_050--Hb_003918_040 Hb_008880_010 Hb_008880_010 Hb_004304_050--Hb_008880_010 Hb_061390_010 Hb_061390_010 Hb_004304_050--Hb_061390_010 Hb_115350_010 Hb_115350_010 Hb_004304_050--Hb_115350_010 Hb_002779_020 Hb_002779_020 Hb_004304_050--Hb_002779_020 Hb_005183_160--Hb_003918_040 Hb_005183_160--Hb_008880_010 Hb_005183_160--Hb_061390_010 Hb_005183_160--Hb_115350_010 Hb_005183_160--Hb_002779_020 Hb_003918_040--Hb_008880_010 Hb_003918_040--Hb_061390_010 Hb_003918_040--Hb_115350_010 Hb_003918_040--Hb_002779_020 Hb_008880_010--Hb_061390_010 Hb_008880_010--Hb_115350_010 Hb_008880_010--Hb_002779_020 Hb_136696_010 Hb_136696_010 Hb_008880_010--Hb_136696_010 Hb_068804_160 Hb_068804_160 Hb_008880_010--Hb_068804_160 Hb_061390_010--Hb_115350_010 Hb_061390_010--Hb_002779_020 Hb_061390_010--Hb_136696_010 Hb_061390_010--Hb_068804_160 Hb_115350_010--Hb_002779_020 Hb_115350_010--Hb_136696_010 Hb_115350_010--Hb_068804_160 Hb_002779_020--Hb_136696_010 Hb_002779_020--Hb_068804_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.01843 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0223698 0 0 0 0

CAGE analysis