Hb_008880_010

Information

Type -
Description -
Location Contig8880: 18319-28626
Sequence    

Annotation

kegg
ID pop:POPTR_0011s03590g
description POPTRDRAFT_771241; hypothetical protein
nr
ID XP_010247752.1
description PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 isoform X2 [Nelumbo nucifera]
swissprot
ID P0DH87
description Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK OS=Arabidopsis thaliana GN=PSEUDOSRKA PE=5 SV=1
trembl
ID B9HYS6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s03590g PE=4 SV=2
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008880_010 0.0 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 isoform X2 [Nelumbo nucifera]
2 Hb_061390_010 0.0001296203 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
3 Hb_115350_010 0.001672203 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
4 Hb_002779_020 0.0021233452 - - transcription factor, putative [Ricinus communis]
5 Hb_136696_010 0.0029614032 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
6 Hb_068804_160 0.0156762976 transcription factor TF Family: MIKC hypothetical protein JCGZ_12632 [Jatropha curcas]
7 Hb_004304_050 0.1279927977 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_005183_160 0.1324603948 - - -
9 Hb_003918_040 0.1388032559 - - -
10 Hb_001798_050 0.1856777463 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
11 Hb_001824_060 0.2972082989 - - -
12 Hb_000215_170 0.3072690838 - - PREDICTED: uncharacterized protein LOC102596491 [Solanum tuberosum]
13 Hb_000011_170 0.3150481275 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
14 Hb_010504_010 0.3392894059 - - 40S ribosomal protein S15C [Hevea brasiliensis]
15 Hb_153231_040 0.3545515669 - - -
16 Hb_004631_120 0.3762190043 - - conserved hypothetical protein [Ricinus communis]
17 Hb_102438_010 0.3839105444 - - -
18 Hb_002307_130 0.4028884324 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004958_030 0.4097573737 - - PREDICTED: uncharacterized protein LOC104904188 [Beta vulgaris subsp. vulgaris]
20 Hb_003368_130 0.4128194127 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_008880_010 Hb_008880_010 Hb_061390_010 Hb_061390_010 Hb_008880_010--Hb_061390_010 Hb_115350_010 Hb_115350_010 Hb_008880_010--Hb_115350_010 Hb_002779_020 Hb_002779_020 Hb_008880_010--Hb_002779_020 Hb_136696_010 Hb_136696_010 Hb_008880_010--Hb_136696_010 Hb_068804_160 Hb_068804_160 Hb_008880_010--Hb_068804_160 Hb_004304_050 Hb_004304_050 Hb_008880_010--Hb_004304_050 Hb_061390_010--Hb_115350_010 Hb_061390_010--Hb_002779_020 Hb_061390_010--Hb_136696_010 Hb_061390_010--Hb_068804_160 Hb_061390_010--Hb_004304_050 Hb_115350_010--Hb_002779_020 Hb_115350_010--Hb_136696_010 Hb_115350_010--Hb_068804_160 Hb_115350_010--Hb_004304_050 Hb_002779_020--Hb_136696_010 Hb_002779_020--Hb_068804_160 Hb_002779_020--Hb_004304_050 Hb_136696_010--Hb_068804_160 Hb_136696_010--Hb_004304_050 Hb_068804_160--Hb_004304_050 Hb_005183_160 Hb_005183_160 Hb_004304_050--Hb_005183_160 Hb_003918_040 Hb_003918_040 Hb_004304_050--Hb_003918_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.00991684 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0225059 0 0 0 0

CAGE analysis