Hb_000350_110

Information

Type -
Description -
Location Contig350: 243306-244058
Sequence    

Annotation

kegg
ID sot:102602164
description uncharacterized LOC102602164
nr
ID XP_009769642.1
description PREDICTED: uncharacterized protein LOC104220461 isoform X2 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID Q6L3I8
description PttA2 protein, putative OS=Solanum demissum GN=SDM1_3t00002 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000350_110 0.0 - - PREDICTED: uncharacterized protein LOC104220461 isoform X2 [Nicotiana sylvestris]
2 Hb_001863_060 0.1258828006 - - PIF-like transposase [Daucus carota]
3 Hb_153231_040 0.2795621826 - - -
4 Hb_002307_130 0.2883881154 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010504_010 0.3042671541 - - 40S ribosomal protein S15C [Hevea brasiliensis]
6 Hb_022212_010 0.3099060202 - - -
7 Hb_148908_020 0.3297878894 - - -
8 Hb_004297_060 0.3298796536 - - Cucumisin protein [Theobroma cacao]
9 Hb_002239_010 0.3354883969 - - -
10 Hb_003368_130 0.343972763 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_009777_010 0.3472892477 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
12 Hb_000215_170 0.3513874148 - - PREDICTED: uncharacterized protein LOC102596491 [Solanum tuberosum]
13 Hb_000608_130 0.3524477872 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_007792_010 0.3976617036 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
15 Hb_000061_350 0.4075468175 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000080_050 0.4130008238 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Vitis vinifera]
17 Hb_000389_070 0.4190830571 - - -
18 Hb_001198_050 0.4196462385 - - hypothetical protein POPTR_0004s22990g [Populus trichocarpa]
19 Hb_004718_020 0.4258992263 - - Potassium channel KAT3, putative [Ricinus communis]
20 Hb_094245_010 0.4301464801 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]

Gene co-expression network

sample Hb_000350_110 Hb_000350_110 Hb_001863_060 Hb_001863_060 Hb_000350_110--Hb_001863_060 Hb_153231_040 Hb_153231_040 Hb_000350_110--Hb_153231_040 Hb_002307_130 Hb_002307_130 Hb_000350_110--Hb_002307_130 Hb_010504_010 Hb_010504_010 Hb_000350_110--Hb_010504_010 Hb_022212_010 Hb_022212_010 Hb_000350_110--Hb_022212_010 Hb_148908_020 Hb_148908_020 Hb_000350_110--Hb_148908_020 Hb_009777_010 Hb_009777_010 Hb_001863_060--Hb_009777_010 Hb_001863_060--Hb_022212_010 Hb_001863_060--Hb_153231_040 Hb_004297_060 Hb_004297_060 Hb_001863_060--Hb_004297_060 Hb_001863_060--Hb_148908_020 Hb_153231_040--Hb_010504_010 Hb_153231_040--Hb_022212_010 Hb_002239_010 Hb_002239_010 Hb_153231_040--Hb_002239_010 Hb_007792_010 Hb_007792_010 Hb_153231_040--Hb_007792_010 Hb_002307_130--Hb_010504_010 Hb_040562_010 Hb_040562_010 Hb_002307_130--Hb_040562_010 Hb_003108_010 Hb_003108_010 Hb_002307_130--Hb_003108_010 Hb_002307_130--Hb_007792_010 Hb_002307_130--Hb_002239_010 Hb_010504_010--Hb_002239_010 Hb_010504_010--Hb_022212_010 Hb_004304_050 Hb_004304_050 Hb_010504_010--Hb_004304_050 Hb_076693_010 Hb_076693_010 Hb_022212_010--Hb_076693_010 Hb_011707_010 Hb_011707_010 Hb_022212_010--Hb_011707_010 Hb_092027_010 Hb_092027_010 Hb_022212_010--Hb_092027_010 Hb_008031_020 Hb_008031_020 Hb_022212_010--Hb_008031_020 Hb_001831_020 Hb_001831_020 Hb_022212_010--Hb_001831_020 Hb_148908_020--Hb_004297_060 Hb_000608_130 Hb_000608_130 Hb_148908_020--Hb_000608_130 Hb_001437_290 Hb_001437_290 Hb_148908_020--Hb_001437_290 Hb_000080_050 Hb_000080_050 Hb_148908_020--Hb_000080_050 Hb_082730_010 Hb_082730_010 Hb_148908_020--Hb_082730_010 Hb_094245_010 Hb_094245_010 Hb_148908_020--Hb_094245_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0458127 0 0 0 0.0461204 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.106522 0 0 0.0344054 0

CAGE analysis