Hb_000080_050

Information

Type -
Description -
Location Contig80: 19095-19502
Sequence    

Annotation

kegg
ID vvi:100256219
description pentatricopeptide repeat-containing protein At4g38150-like
nr
ID XP_002278276.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Vitis vinifera]
swissprot
ID Q9SZL5
description Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1
trembl
ID F6I4J5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00050 PE=4 SV=1
Gene Ontology
ID GO:0016491
description pentatricopeptide repeat-containing protein at4g38150-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58722: 19886-23466 , PASA_asmbl_58724: 19864-23337
cDNA
(Sanger)
(ID:Location)		 017_N03.ab1: 20047-23381

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000080_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Vitis vinifera]
2 Hb_000608_130 0.236301494 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_004297_060 0.2881614445 - - Cucumisin protein [Theobroma cacao]
4 Hb_148908_020 0.2923154556 - - -
5 Hb_007713_020 0.3480708742 - - -
6 Hb_000345_470 0.3578307829 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
7 Hb_012522_020 0.3615475868 - - -
8 Hb_001080_110 0.361860661 - - -
9 Hb_048125_010 0.3623648611 - - PREDICTED: uncharacterized protein LOC104104928 [Nicotiana tomentosiformis]
10 Hb_019677_010 0.3634042994 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_000058_220 0.3635044892 - - hypothetical protein, partial [Staphylococcus aureus]
12 Hb_001831_020 0.3638036421 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
13 Hb_008031_020 0.3639629985 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
14 Hb_049901_010 0.3664990697 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
15 Hb_034454_020 0.3665144497 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_009078_040 0.3722834709 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
17 Hb_000425_050 0.3783101616 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
18 Hb_009563_020 0.378338309 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_007287_020 0.3783918137 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
20 Hb_001147_100 0.3784637986 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_000080_050 Hb_000080_050 Hb_000608_130 Hb_000608_130 Hb_000080_050--Hb_000608_130 Hb_004297_060 Hb_004297_060 Hb_000080_050--Hb_004297_060 Hb_148908_020 Hb_148908_020 Hb_000080_050--Hb_148908_020 Hb_007713_020 Hb_007713_020 Hb_000080_050--Hb_007713_020 Hb_000345_470 Hb_000345_470 Hb_000080_050--Hb_000345_470 Hb_012522_020 Hb_012522_020 Hb_000080_050--Hb_012522_020 Hb_000608_130--Hb_004297_060 Hb_000608_130--Hb_148908_020 Hb_000608_130--Hb_007713_020 Hb_000608_130--Hb_012522_020 Hb_048125_010 Hb_048125_010 Hb_000608_130--Hb_048125_010 Hb_004297_060--Hb_148908_020 Hb_001437_290 Hb_001437_290 Hb_004297_060--Hb_001437_290 Hb_011707_010 Hb_011707_010 Hb_004297_060--Hb_011707_010 Hb_076693_010 Hb_076693_010 Hb_004297_060--Hb_076693_010 Hb_148908_020--Hb_001437_290 Hb_082730_010 Hb_082730_010 Hb_148908_020--Hb_082730_010 Hb_094245_010 Hb_094245_010 Hb_148908_020--Hb_094245_010 Hb_007713_020--Hb_012522_020 Hb_007713_020--Hb_048125_010 Hb_019677_010 Hb_019677_010 Hb_007713_020--Hb_019677_010 Hb_000058_220 Hb_000058_220 Hb_007713_020--Hb_000058_220 Hb_001831_020 Hb_001831_020 Hb_007713_020--Hb_001831_020 Hb_008031_020 Hb_008031_020 Hb_007713_020--Hb_008031_020 Hb_002461_050 Hb_002461_050 Hb_000345_470--Hb_002461_050 Hb_126508_010 Hb_126508_010 Hb_000345_470--Hb_126508_010 Hb_034243_030 Hb_034243_030 Hb_000345_470--Hb_034243_030 Hb_002099_020 Hb_002099_020 Hb_000345_470--Hb_002099_020 Hb_000205_170 Hb_000205_170 Hb_000345_470--Hb_000205_170 Hb_003058_050 Hb_003058_050 Hb_000345_470--Hb_003058_050 Hb_012522_020--Hb_048125_010 Hb_012522_020--Hb_019677_010 Hb_012522_020--Hb_000058_220 Hb_012522_020--Hb_001831_020 Hb_012522_020--Hb_008031_020 Hb_012522_020--Hb_011707_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0810476 0 0.0635474 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383798 0 0 0.064345 0

CAGE analysis