Hb_126508_010

Information

Type -
Description -
Location Contig126508: 4407-5536
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126508_010 0.0 - - -
2 Hb_002461_050 0.1427020918 - - -
3 Hb_000345_470 0.2161654395 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
4 Hb_003992_010 0.2507769771 - - -
5 Hb_105061_010 0.3053262645 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
6 Hb_034243_030 0.3075271075 - - B3 domain-containing protein [Medicago truncatula]
7 Hb_000274_030 0.3276663077 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
8 Hb_003266_120 0.332826604 - - PREDICTED: uncharacterized protein LOC105650228 [Jatropha curcas]
9 Hb_001135_230 0.3394225422 - - PREDICTED: protein REVEILLE 6-like isoform X3 [Gossypium raimondii]
10 Hb_043295_010 0.3469584673 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_007245_010 0.346991271 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
12 Hb_000964_160 0.3481188758 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
13 Hb_002545_030 0.363639132 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000441_010 0.365708918 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
15 Hb_014720_060 0.3660169261 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
16 Hb_131101_010 0.3727417409 - - -
17 Hb_001761_110 0.3747394346 - - Contains similarity to Cf-2.2 gene gb
18 Hb_000205_170 0.3751090521 - - PREDICTED: uncharacterized protein LOC103926801 [Pyrus x bretschneideri]
19 Hb_001248_040 0.3805079035 - - -
20 Hb_021409_130 0.3893128324 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]

Gene co-expression network

sample Hb_126508_010 Hb_126508_010 Hb_002461_050 Hb_002461_050 Hb_126508_010--Hb_002461_050 Hb_000345_470 Hb_000345_470 Hb_126508_010--Hb_000345_470 Hb_003992_010 Hb_003992_010 Hb_126508_010--Hb_003992_010 Hb_105061_010 Hb_105061_010 Hb_126508_010--Hb_105061_010 Hb_034243_030 Hb_034243_030 Hb_126508_010--Hb_034243_030 Hb_000274_030 Hb_000274_030 Hb_126508_010--Hb_000274_030 Hb_002461_050--Hb_003992_010 Hb_002461_050--Hb_000345_470 Hb_002461_050--Hb_034243_030 Hb_015183_040 Hb_015183_040 Hb_002461_050--Hb_015183_040 Hb_002461_050--Hb_105061_010 Hb_000345_470--Hb_034243_030 Hb_002099_020 Hb_002099_020 Hb_000345_470--Hb_002099_020 Hb_000205_170 Hb_000205_170 Hb_000345_470--Hb_000205_170 Hb_003058_050 Hb_003058_050 Hb_000345_470--Hb_003058_050 Hb_003992_010--Hb_034243_030 Hb_003992_010--Hb_015183_040 Hb_003992_010--Hb_000345_470 Hb_003992_010--Hb_105061_010 Hb_001999_270 Hb_001999_270 Hb_105061_010--Hb_001999_270 Hb_004413_040 Hb_004413_040 Hb_105061_010--Hb_004413_040 Hb_105061_010--Hb_000345_470 Hb_034243_030--Hb_015183_040 Hb_034243_030--Hb_001999_270 Hb_003266_120 Hb_003266_120 Hb_000274_030--Hb_003266_120 Hb_043295_010 Hb_043295_010 Hb_000274_030--Hb_043295_010 Hb_007245_010 Hb_007245_010 Hb_000274_030--Hb_007245_010 Hb_000964_160 Hb_000964_160 Hb_000274_030--Hb_000964_160 Hb_001248_040 Hb_001248_040 Hb_000274_030--Hb_001248_040 Hb_002545_030 Hb_002545_030 Hb_000274_030--Hb_002545_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55599 0 0.789954 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.817033 0 0 0 0

CAGE analysis