Hb_034243_030

Information

Type -
Description -
Location Contig34243: 15284-15753
Sequence    

Annotation

kegg
ID mtr:MTR_3g098790
description B3 domain-containing protein
nr
ID XP_003602766.1
description B3 domain-containing protein [Medicago truncatula]
swissprot
ID Q9ZSH7
description B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2 SV=1
trembl
ID G7J3B6
description Plant-specific B3-DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g098790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034243_030 0.0 - - B3 domain-containing protein [Medicago truncatula]
2 Hb_003992_010 0.1070118228 - - -
3 Hb_015183_040 0.1098922061 - - -
4 Hb_002461_050 0.1696497937 - - -
5 Hb_000345_470 0.2640281651 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
6 Hb_001999_270 0.2774878443 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
7 Hb_126508_010 0.3075271075 - - -
8 Hb_105061_010 0.3231303027 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_153258_060 0.3266124 - - -
10 Hb_006831_060 0.3444349288 - - hypothetical protein JCGZ_16419 [Jatropha curcas]
11 Hb_004491_020 0.3823724298 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
12 Hb_000264_150 0.382552624 - - PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
13 Hb_001722_090 0.3844904671 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
14 Hb_001709_100 0.3845742388 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
15 Hb_001247_340 0.3866264915 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
16 Hb_162189_010 0.4026111696 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
17 Hb_007545_040 0.4043627909 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
18 Hb_004324_170 0.4065467361 - - -
19 Hb_000025_380 0.4166326743 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
20 Hb_005489_030 0.4171251436 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]

Gene co-expression network

sample Hb_034243_030 Hb_034243_030 Hb_003992_010 Hb_003992_010 Hb_034243_030--Hb_003992_010 Hb_015183_040 Hb_015183_040 Hb_034243_030--Hb_015183_040 Hb_002461_050 Hb_002461_050 Hb_034243_030--Hb_002461_050 Hb_000345_470 Hb_000345_470 Hb_034243_030--Hb_000345_470 Hb_001999_270 Hb_001999_270 Hb_034243_030--Hb_001999_270 Hb_126508_010 Hb_126508_010 Hb_034243_030--Hb_126508_010 Hb_003992_010--Hb_002461_050 Hb_003992_010--Hb_015183_040 Hb_003992_010--Hb_126508_010 Hb_003992_010--Hb_000345_470 Hb_105061_010 Hb_105061_010 Hb_003992_010--Hb_105061_010 Hb_015183_040--Hb_001999_270 Hb_015183_040--Hb_002461_050 Hb_004491_020 Hb_004491_020 Hb_015183_040--Hb_004491_020 Hb_000264_150 Hb_000264_150 Hb_015183_040--Hb_000264_150 Hb_002461_050--Hb_126508_010 Hb_002461_050--Hb_000345_470 Hb_002461_050--Hb_105061_010 Hb_000345_470--Hb_126508_010 Hb_002099_020 Hb_002099_020 Hb_000345_470--Hb_002099_020 Hb_000205_170 Hb_000205_170 Hb_000345_470--Hb_000205_170 Hb_003058_050 Hb_003058_050 Hb_000345_470--Hb_003058_050 Hb_001999_270--Hb_105061_010 Hb_006831_060 Hb_006831_060 Hb_001999_270--Hb_006831_060 Hb_009083_040 Hb_009083_040 Hb_001999_270--Hb_009083_040 Hb_005489_030 Hb_005489_030 Hb_001999_270--Hb_005489_030 Hb_126508_010--Hb_105061_010 Hb_000274_030 Hb_000274_030 Hb_126508_010--Hb_000274_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21796 0 0.34958 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.259812 0 0 0 0

CAGE analysis