Hb_015183_040

Information

Type -
Description -
Location Contig15183: 26772-27059
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016772
description probable serine threonine-protein kinase nak

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12914: 26004-26364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015183_040 0.0 - - -
2 Hb_034243_030 0.1098922061 - - B3 domain-containing protein [Medicago truncatula]
3 Hb_003992_010 0.2050512679 - - -
4 Hb_001999_270 0.2529304981 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
5 Hb_002461_050 0.2734969605 - - -
6 Hb_004491_020 0.2904931661 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
7 Hb_000264_150 0.2910041101 - - PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
8 Hb_001722_090 0.2945925461 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
9 Hb_001247_340 0.2946438048 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
10 Hb_001709_100 0.2947340428 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
11 Hb_153258_060 0.3125476207 - - -
12 Hb_162189_010 0.3149398947 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
13 Hb_007545_040 0.3171947367 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
14 Hb_006831_060 0.3189378492 - - hypothetical protein JCGZ_16419 [Jatropha curcas]
15 Hb_004324_170 0.3200056385 - - -
16 Hb_000345_470 0.3339881163 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
17 Hb_156850_010 0.3446072992 - - PREDICTED: uncharacterized protein LOC105635403 [Jatropha curcas]
18 Hb_000025_380 0.367686276 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
19 Hb_022680_020 0.3766523194 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
20 Hb_105061_010 0.3848646534 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_015183_040 Hb_015183_040 Hb_034243_030 Hb_034243_030 Hb_015183_040--Hb_034243_030 Hb_003992_010 Hb_003992_010 Hb_015183_040--Hb_003992_010 Hb_001999_270 Hb_001999_270 Hb_015183_040--Hb_001999_270 Hb_002461_050 Hb_002461_050 Hb_015183_040--Hb_002461_050 Hb_004491_020 Hb_004491_020 Hb_015183_040--Hb_004491_020 Hb_000264_150 Hb_000264_150 Hb_015183_040--Hb_000264_150 Hb_034243_030--Hb_003992_010 Hb_034243_030--Hb_002461_050 Hb_000345_470 Hb_000345_470 Hb_034243_030--Hb_000345_470 Hb_034243_030--Hb_001999_270 Hb_126508_010 Hb_126508_010 Hb_034243_030--Hb_126508_010 Hb_003992_010--Hb_002461_050 Hb_003992_010--Hb_126508_010 Hb_003992_010--Hb_000345_470 Hb_105061_010 Hb_105061_010 Hb_003992_010--Hb_105061_010 Hb_001999_270--Hb_105061_010 Hb_006831_060 Hb_006831_060 Hb_001999_270--Hb_006831_060 Hb_009083_040 Hb_009083_040 Hb_001999_270--Hb_009083_040 Hb_005489_030 Hb_005489_030 Hb_001999_270--Hb_005489_030 Hb_002461_050--Hb_126508_010 Hb_002461_050--Hb_000345_470 Hb_002461_050--Hb_105061_010 Hb_004491_020--Hb_000264_150 Hb_001722_090 Hb_001722_090 Hb_004491_020--Hb_001722_090 Hb_001709_100 Hb_001709_100 Hb_004491_020--Hb_001709_100 Hb_001247_340 Hb_001247_340 Hb_004491_020--Hb_001247_340 Hb_162189_010 Hb_162189_010 Hb_004491_020--Hb_162189_010 Hb_007545_040 Hb_007545_040 Hb_004491_020--Hb_007545_040 Hb_000264_150--Hb_001722_090 Hb_000264_150--Hb_001709_100 Hb_000264_150--Hb_001247_340 Hb_000264_150--Hb_162189_010 Hb_000264_150--Hb_007545_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221277 0 0.661208 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.5129 0 0 0 0

CAGE analysis