Hb_105061_010

Information

Type -
Description -
Location Contig105061: 531-1169
Sequence    

Annotation

kegg
ID cmo:103496653
description uncharacterized LOC103496653
nr
ID XP_012092566.1
description PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0NVE7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_16817 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105061_010 0.0 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
2 Hb_001999_270 0.2718445204 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
3 Hb_004413_040 0.2720210308 - - -
4 Hb_002461_050 0.275252622 - - -
5 Hb_126508_010 0.3053262645 - - -
6 Hb_003992_010 0.3093852519 - - -
7 Hb_000345_470 0.3154845926 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
8 Hb_034243_030 0.3231303027 - - B3 domain-containing protein [Medicago truncatula]
9 Hb_047287_040 0.35211697 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
10 Hb_005489_030 0.3541983774 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
11 Hb_002928_100 0.3612068701 - - -
12 Hb_002194_080 0.3765833864 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
13 Hb_015183_040 0.3848646534 - - -
14 Hb_000270_860 0.3850351503 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001300_210 0.4008735232 transcription factor TF Family: ARF PREDICTED: auxin response factor 23-like [Jatropha curcas]
16 Hb_001722_030 0.4031924184 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105123768 isoform X2 [Populus euphratica]
17 Hb_007741_170 0.4052481868 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4-like [Jatropha curcas]
18 Hb_005298_050 0.4113022464 - - Integrase core domain, putative [Oryza sativa Japonica Group]
19 Hb_001828_010 0.4216214878 - - -
20 Hb_006831_060 0.4225200816 - - hypothetical protein JCGZ_16419 [Jatropha curcas]

Gene co-expression network

sample Hb_105061_010 Hb_105061_010 Hb_001999_270 Hb_001999_270 Hb_105061_010--Hb_001999_270 Hb_004413_040 Hb_004413_040 Hb_105061_010--Hb_004413_040 Hb_002461_050 Hb_002461_050 Hb_105061_010--Hb_002461_050 Hb_126508_010 Hb_126508_010 Hb_105061_010--Hb_126508_010 Hb_003992_010 Hb_003992_010 Hb_105061_010--Hb_003992_010 Hb_000345_470 Hb_000345_470 Hb_105061_010--Hb_000345_470 Hb_015183_040 Hb_015183_040 Hb_001999_270--Hb_015183_040 Hb_034243_030 Hb_034243_030 Hb_001999_270--Hb_034243_030 Hb_006831_060 Hb_006831_060 Hb_001999_270--Hb_006831_060 Hb_009083_040 Hb_009083_040 Hb_001999_270--Hb_009083_040 Hb_005489_030 Hb_005489_030 Hb_001999_270--Hb_005489_030 Hb_106159_010 Hb_106159_010 Hb_004413_040--Hb_106159_010 Hb_001722_030 Hb_001722_030 Hb_004413_040--Hb_001722_030 Hb_063716_060 Hb_063716_060 Hb_004413_040--Hb_063716_060 Hb_002194_080 Hb_002194_080 Hb_004413_040--Hb_002194_080 Hb_000002_320 Hb_000002_320 Hb_004413_040--Hb_000002_320 Hb_002461_050--Hb_003992_010 Hb_002461_050--Hb_126508_010 Hb_002461_050--Hb_000345_470 Hb_002461_050--Hb_034243_030 Hb_002461_050--Hb_015183_040 Hb_126508_010--Hb_000345_470 Hb_126508_010--Hb_003992_010 Hb_126508_010--Hb_034243_030 Hb_000274_030 Hb_000274_030 Hb_126508_010--Hb_000274_030 Hb_003992_010--Hb_034243_030 Hb_003992_010--Hb_015183_040 Hb_003992_010--Hb_000345_470 Hb_000345_470--Hb_034243_030 Hb_002099_020 Hb_002099_020 Hb_000345_470--Hb_002099_020 Hb_000205_170 Hb_000205_170 Hb_000345_470--Hb_000205_170 Hb_003058_050 Hb_003058_050 Hb_000345_470--Hb_003058_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150903 0 0.0905178 0 0 0.0558252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0920698 0 0 0 0

CAGE analysis