Hb_004413_040

Information

Type -
Description -
Location Contig4413: 26047-28319
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004413_040 0.0 - - -
2 Hb_105061_010 0.2720210308 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_106159_010 0.2841541345 - - -
4 Hb_001722_030 0.3244634509 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105123768 isoform X2 [Populus euphratica]
5 Hb_063716_060 0.3250397806 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002194_080 0.3352128937 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
7 Hb_000002_320 0.3426135551 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
8 Hb_000025_060 0.3514224571 - - unknown [Populus trichocarpa]
9 Hb_002352_040 0.352375808 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
10 Hb_011401_010 0.3608538659 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
11 Hb_029162_020 0.3624620359 - - -
12 Hb_048610_010 0.3628293049 - - -
13 Hb_002928_100 0.3634211597 - - -
14 Hb_144101_010 0.3683428687 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
15 Hb_072775_010 0.3729132891 - - 60S ribosomal L37-3 -like protein [Gossypium arboreum]
16 Hb_000707_070 0.3853704996 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like isoform X1 [Populus euphratica]
17 Hb_000217_050 0.3886866323 - - elongation factor 1-alpha, putative [Ricinus communis]
18 Hb_001023_020 0.3905263208 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
19 Hb_002205_200 0.3936811644 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
20 Hb_000931_030 0.3957363998 - - PREDICTED: uncharacterized protein LOC105130278 [Populus euphratica]

Gene co-expression network

sample Hb_004413_040 Hb_004413_040 Hb_105061_010 Hb_105061_010 Hb_004413_040--Hb_105061_010 Hb_106159_010 Hb_106159_010 Hb_004413_040--Hb_106159_010 Hb_001722_030 Hb_001722_030 Hb_004413_040--Hb_001722_030 Hb_063716_060 Hb_063716_060 Hb_004413_040--Hb_063716_060 Hb_002194_080 Hb_002194_080 Hb_004413_040--Hb_002194_080 Hb_000002_320 Hb_000002_320 Hb_004413_040--Hb_000002_320 Hb_001999_270 Hb_001999_270 Hb_105061_010--Hb_001999_270 Hb_002461_050 Hb_002461_050 Hb_105061_010--Hb_002461_050 Hb_126508_010 Hb_126508_010 Hb_105061_010--Hb_126508_010 Hb_003992_010 Hb_003992_010 Hb_105061_010--Hb_003992_010 Hb_000345_470 Hb_000345_470 Hb_105061_010--Hb_000345_470 Hb_106159_010--Hb_001722_030 Hb_011401_010 Hb_011401_010 Hb_106159_010--Hb_011401_010 Hb_002231_050 Hb_002231_050 Hb_106159_010--Hb_002231_050 Hb_002205_200 Hb_002205_200 Hb_106159_010--Hb_002205_200 Hb_000875_100 Hb_000875_100 Hb_106159_010--Hb_000875_100 Hb_001722_030--Hb_011401_010 Hb_001722_030--Hb_002231_050 Hb_002928_100 Hb_002928_100 Hb_001722_030--Hb_002928_100 Hb_007792_010 Hb_007792_010 Hb_001722_030--Hb_007792_010 Hb_001722_030--Hb_002205_200 Hb_063716_060--Hb_000002_320 Hb_002540_040 Hb_002540_040 Hb_063716_060--Hb_002540_040 Hb_000521_110 Hb_000521_110 Hb_063716_060--Hb_000521_110 Hb_000219_070 Hb_000219_070 Hb_063716_060--Hb_000219_070 Hb_011781_040 Hb_011781_040 Hb_063716_060--Hb_011781_040 Hb_000922_440 Hb_000922_440 Hb_063716_060--Hb_000922_440 Hb_004449_190 Hb_004449_190 Hb_002194_080--Hb_004449_190 Hb_002352_040 Hb_002352_040 Hb_002194_080--Hb_002352_040 Hb_005489_030 Hb_005489_030 Hb_002194_080--Hb_005489_030 Hb_000377_100 Hb_000377_100 Hb_002194_080--Hb_000377_100 Hb_007777_020 Hb_007777_020 Hb_002194_080--Hb_007777_020 Hb_001023_020 Hb_001023_020 Hb_000002_320--Hb_001023_020 Hb_010222_010 Hb_010222_010 Hb_000002_320--Hb_010222_010 Hb_003556_020 Hb_003556_020 Hb_000002_320--Hb_003556_020 Hb_000188_090 Hb_000188_090 Hb_000002_320--Hb_000188_090 Hb_002463_080 Hb_002463_080 Hb_000002_320--Hb_002463_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.247978 0 0.10753 0 0 0.377516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.163064 0 0 0 0

CAGE analysis