Hb_000377_100

Information

Type -
Description -
Location Contig377: 163556-165291
Sequence    

Annotation

kegg
ID tcc:TCM_016873
description LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like protein
nr
ID XP_007031450.1
description LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like protein [Theobroma cacao]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID A0A061EBR6
description LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like protein OS=Theobroma cacao GN=TCM_016873 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000377_100 0.0 - - LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like protein [Theobroma cacao]
2 Hb_000212_480 0.2817523116 - - -
3 Hb_009083_040 0.3117825572 - - hypothetical protein JCGZ_12563 [Jatropha curcas]
4 Hb_002194_080 0.3672204912 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
5 Hb_048110_010 0.3741871185 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
6 Hb_004449_190 0.3890669095 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
7 Hb_002352_040 0.3957572353 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
8 Hb_001824_060 0.4040007552 - - -
9 Hb_000028_120 0.4046459752 - - Os03g0221800 [Oryza sativa Japonica Group]
10 Hb_001524_110 0.4279482123 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
11 Hb_057655_010 0.4311796644 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_001136_120 0.4336311942 - - -
13 Hb_001999_270 0.4371281193 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
14 Hb_000011_170 0.4378288771 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
15 Hb_011537_120 0.4436272777 - - -
16 Hb_000493_020 0.4439828242 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
17 Hb_001922_040 0.44787895 - - reticulon family protein [Populus trichocarpa]
18 Hb_068922_010 0.4480483336 - - hypothetical protein POPTR_0005s17480g [Populus trichocarpa]
19 Hb_001080_110 0.4487756294 - - -
20 Hb_000529_100 0.4493130608 - - hypothetical protein POPTR_0009s05980g [Populus trichocarpa]

Gene co-expression network

sample Hb_000377_100 Hb_000377_100 Hb_000212_480 Hb_000212_480 Hb_000377_100--Hb_000212_480 Hb_009083_040 Hb_009083_040 Hb_000377_100--Hb_009083_040 Hb_002194_080 Hb_002194_080 Hb_000377_100--Hb_002194_080 Hb_048110_010 Hb_048110_010 Hb_000377_100--Hb_048110_010 Hb_004449_190 Hb_004449_190 Hb_000377_100--Hb_004449_190 Hb_002352_040 Hb_002352_040 Hb_000377_100--Hb_002352_040 Hb_000212_480--Hb_009083_040 Hb_001999_270 Hb_001999_270 Hb_000212_480--Hb_001999_270 Hb_001136_120 Hb_001136_120 Hb_000212_480--Hb_001136_120 Hb_001080_110 Hb_001080_110 Hb_000212_480--Hb_001080_110 Hb_002272_190 Hb_002272_190 Hb_000212_480--Hb_002272_190 Hb_009083_040--Hb_001999_270 Hb_004324_170 Hb_004324_170 Hb_009083_040--Hb_004324_170 Hb_007545_040 Hb_007545_040 Hb_009083_040--Hb_007545_040 Hb_162189_010 Hb_162189_010 Hb_009083_040--Hb_162189_010 Hb_002194_080--Hb_004449_190 Hb_002194_080--Hb_002352_040 Hb_004413_040 Hb_004413_040 Hb_002194_080--Hb_004413_040 Hb_005489_030 Hb_005489_030 Hb_002194_080--Hb_005489_030 Hb_007777_020 Hb_007777_020 Hb_002194_080--Hb_007777_020 Hb_002289_020 Hb_002289_020 Hb_048110_010--Hb_002289_020 Hb_124480_010 Hb_124480_010 Hb_048110_010--Hb_124480_010 Hb_108884_010 Hb_108884_010 Hb_048110_010--Hb_108884_010 Hb_002135_040 Hb_002135_040 Hb_048110_010--Hb_002135_040 Hb_003849_090 Hb_003849_090 Hb_048110_010--Hb_003849_090 Hb_071923_010 Hb_071923_010 Hb_048110_010--Hb_071923_010 Hb_004449_190--Hb_002352_040 Hb_000608_060 Hb_000608_060 Hb_004449_190--Hb_000608_060 Hb_001711_070 Hb_001711_070 Hb_004449_190--Hb_001711_070 Hb_004931_080 Hb_004931_080 Hb_004449_190--Hb_004931_080 Hb_004449_190--Hb_007777_020 Hb_056531_040 Hb_056531_040 Hb_002352_040--Hb_056531_040 Hb_072775_010 Hb_072775_010 Hb_002352_040--Hb_072775_010 Hb_086287_020 Hb_086287_020 Hb_002352_040--Hb_086287_020 Hb_002352_040--Hb_071923_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0503794 0 0.0312931 0.0722308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0769282 0 0 0 0

CAGE analysis