Hb_124480_010

Information

Type -
Description -
Location Contig124480: 553-2297
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_012487705.1
description PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124480_010 0.0 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
2 Hb_002534_110 0.091179032 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
3 Hb_002289_020 0.1493080269 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_000889_090 0.1896247579 - - isocitrate lyase, putative [Ricinus communis]
5 Hb_004162_300 0.3192478758 - - monovalent cation:proton antiporter, putative [Ricinus communis]
6 Hb_027014_010 0.3197700831 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
7 Hb_034050_010 0.3218278869 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
8 Hb_097730_010 0.3223918977 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
9 Hb_121031_010 0.3233734587 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
10 Hb_163115_010 0.3250014902 - - -
11 Hb_048110_010 0.3312192039 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
12 Hb_183366_010 0.3350810561 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
13 Hb_000875_100 0.3379952075 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
14 Hb_001809_040 0.3392288918 - - PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]
15 Hb_000599_060 0.3450893991 - - PREDICTED: legumin A-like [Jatropha curcas]
16 Hb_013272_010 0.3481493354 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_004532_010 0.3558968867 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
18 Hb_108884_010 0.3751883779 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Prunus mume]
19 Hb_002135_040 0.3819472703 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
20 Hb_115784_010 0.3933787778 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_124480_010 Hb_124480_010 Hb_002534_110 Hb_002534_110 Hb_124480_010--Hb_002534_110 Hb_002289_020 Hb_002289_020 Hb_124480_010--Hb_002289_020 Hb_000889_090 Hb_000889_090 Hb_124480_010--Hb_000889_090 Hb_004162_300 Hb_004162_300 Hb_124480_010--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_124480_010--Hb_027014_010 Hb_034050_010 Hb_034050_010 Hb_124480_010--Hb_034050_010 Hb_002534_110--Hb_000889_090 Hb_002534_110--Hb_002289_020 Hb_097730_010 Hb_097730_010 Hb_002534_110--Hb_097730_010 Hb_013272_010 Hb_013272_010 Hb_002534_110--Hb_013272_010 Hb_000836_200 Hb_000836_200 Hb_002534_110--Hb_000836_200 Hb_002289_020--Hb_000889_090 Hb_048110_010 Hb_048110_010 Hb_002289_020--Hb_048110_010 Hb_000875_100 Hb_000875_100 Hb_002289_020--Hb_000875_100 Hb_001014_200 Hb_001014_200 Hb_002289_020--Hb_001014_200 Hb_000889_090--Hb_097730_010 Hb_000889_090--Hb_000836_200 Hb_000889_090--Hb_013272_010 Hb_004162_300--Hb_027014_010 Hb_163115_010 Hb_163115_010 Hb_004162_300--Hb_163115_010 Hb_004162_300--Hb_034050_010 Hb_121031_010 Hb_121031_010 Hb_004162_300--Hb_121031_010 Hb_183366_010 Hb_183366_010 Hb_004162_300--Hb_183366_010 Hb_001809_040 Hb_001809_040 Hb_004162_300--Hb_001809_040 Hb_027014_010--Hb_163115_010 Hb_027014_010--Hb_034050_010 Hb_027014_010--Hb_183366_010 Hb_027014_010--Hb_121031_010 Hb_027014_010--Hb_001809_040 Hb_034050_010--Hb_121031_010 Hb_034050_010--Hb_000875_100 Hb_034050_010--Hb_163115_010 Hb_034050_010--Hb_183366_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.013217 0 0 0 0.0264953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0302538 0 0 0 0

CAGE analysis