Hb_002289_020

Information

Type -
Description -
Location Contig2289: 28786-33407
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002289_020 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_124480_010 0.1493080269 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
3 Hb_002534_110 0.1929939245 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
4 Hb_000889_090 0.2853931544 - - isocitrate lyase, putative [Ricinus communis]
5 Hb_048110_010 0.3166419089 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
6 Hb_000875_100 0.3440274108 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
7 Hb_001014_200 0.3516203522 - - -
8 Hb_121031_010 0.355730625 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
9 Hb_034050_010 0.3586402206 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
10 Hb_003849_090 0.3607405882 - - -
11 Hb_001544_020 0.3659091877 - - -
12 Hb_108884_010 0.3727836709 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Prunus mume]
13 Hb_097730_010 0.3754722827 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
14 Hb_004162_300 0.3823657099 - - monovalent cation:proton antiporter, putative [Ricinus communis]
15 Hb_027014_010 0.385715623 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
16 Hb_007545_160 0.3863948079 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
17 Hb_002135_040 0.3876502154 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
18 Hb_004410_060 0.3876880033 - - -
19 Hb_013272_010 0.3880553613 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_043950_010 0.388637974 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]

Gene co-expression network

sample Hb_002289_020 Hb_002289_020 Hb_124480_010 Hb_124480_010 Hb_002289_020--Hb_124480_010 Hb_002534_110 Hb_002534_110 Hb_002289_020--Hb_002534_110 Hb_000889_090 Hb_000889_090 Hb_002289_020--Hb_000889_090 Hb_048110_010 Hb_048110_010 Hb_002289_020--Hb_048110_010 Hb_000875_100 Hb_000875_100 Hb_002289_020--Hb_000875_100 Hb_001014_200 Hb_001014_200 Hb_002289_020--Hb_001014_200 Hb_124480_010--Hb_002534_110 Hb_124480_010--Hb_000889_090 Hb_004162_300 Hb_004162_300 Hb_124480_010--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_124480_010--Hb_027014_010 Hb_034050_010 Hb_034050_010 Hb_124480_010--Hb_034050_010 Hb_002534_110--Hb_000889_090 Hb_097730_010 Hb_097730_010 Hb_002534_110--Hb_097730_010 Hb_013272_010 Hb_013272_010 Hb_002534_110--Hb_013272_010 Hb_000836_200 Hb_000836_200 Hb_002534_110--Hb_000836_200 Hb_000889_090--Hb_097730_010 Hb_000889_090--Hb_000836_200 Hb_000889_090--Hb_013272_010 Hb_048110_010--Hb_124480_010 Hb_108884_010 Hb_108884_010 Hb_048110_010--Hb_108884_010 Hb_002135_040 Hb_002135_040 Hb_048110_010--Hb_002135_040 Hb_003849_090 Hb_003849_090 Hb_048110_010--Hb_003849_090 Hb_071923_010 Hb_071923_010 Hb_048110_010--Hb_071923_010 Hb_121031_010 Hb_121031_010 Hb_000875_100--Hb_121031_010 Hb_000875_100--Hb_034050_010 Hb_000875_100--Hb_001014_200 Hb_000875_100--Hb_004162_300 Hb_000875_100--Hb_027014_010 Hb_163115_010 Hb_163115_010 Hb_000875_100--Hb_163115_010 Hb_011537_120 Hb_011537_120 Hb_001014_200--Hb_011537_120 Hb_001014_200--Hb_121031_010 Hb_033883_050 Hb_033883_050 Hb_001014_200--Hb_033883_050 Hb_001014_200--Hb_034050_010 Hb_110486_010 Hb_110486_010 Hb_001014_200--Hb_110486_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00816708 0 0 0 0.0196993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0102261 0 0 0 0

CAGE analysis