Hb_108884_010

Information

Type -
Description -
Location Contig108884: 2649-4536
Sequence    

Annotation

kegg
ID pmum:103318736
description pentatricopeptide repeat-containing protein At5g18390, mitochondrial
nr
ID XP_008218376.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Prunus mume]
swissprot
ID Q94JX6
description Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2 SV=2
trembl
ID M5WME7
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025361mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108884_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Prunus mume]
2 Hb_001017_120 0.2563194384 - - -
3 Hb_027913_020 0.269065525 - - -
4 Hb_021576_060 0.2799611365 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002234_190 0.2941557248 - - PREDICTED: putative non-specific lipid-transfer protein 14 [Jatropha curcas]
6 Hb_004586_450 0.3136992419 - - -
7 Hb_137461_010 0.3200045801 - - hypothetical protein POPTR_0011s03680g [Populus trichocarpa]
8 Hb_001427_060 0.3205778495 - - -
9 Hb_141383_010 0.3246216845 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
10 Hb_009476_140 0.3299507833 transcription factor TF Family: bHLH hypothetical protein RCOM_0838610 [Ricinus communis]
11 Hb_048110_010 0.3339425982 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
12 Hb_026747_020 0.3355670654 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_007333_010 0.3356023645 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_012052_010 0.3365412795 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
15 Hb_027472_030 0.336599749 - - RNA helicase 36, partial [Manihot esculenta]
16 Hb_000996_170 0.3375344289 - - unknown [Glycine max]
17 Hb_001047_140 0.3384451821 - - -
18 Hb_003994_170 0.3411236808 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
19 Hb_077054_010 0.3411965057 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
20 Hb_003849_090 0.3425474725 - - -

Gene co-expression network

sample Hb_108884_010 Hb_108884_010 Hb_001017_120 Hb_001017_120 Hb_108884_010--Hb_001017_120 Hb_027913_020 Hb_027913_020 Hb_108884_010--Hb_027913_020 Hb_021576_060 Hb_021576_060 Hb_108884_010--Hb_021576_060 Hb_002234_190 Hb_002234_190 Hb_108884_010--Hb_002234_190 Hb_004586_450 Hb_004586_450 Hb_108884_010--Hb_004586_450 Hb_137461_010 Hb_137461_010 Hb_108884_010--Hb_137461_010 Hb_000331_320 Hb_000331_320 Hb_001017_120--Hb_000331_320 Hb_001047_140 Hb_001047_140 Hb_001017_120--Hb_001047_140 Hb_001017_120--Hb_004586_450 Hb_017436_010 Hb_017436_010 Hb_001017_120--Hb_017436_010 Hb_056768_010 Hb_056768_010 Hb_001017_120--Hb_056768_010 Hb_000389_180 Hb_000389_180 Hb_027913_020--Hb_000389_180 Hb_000120_580 Hb_000120_580 Hb_027913_020--Hb_000120_580 Hb_087596_010 Hb_087596_010 Hb_027913_020--Hb_087596_010 Hb_004316_120 Hb_004316_120 Hb_027913_020--Hb_004316_120 Hb_006788_120 Hb_006788_120 Hb_027913_020--Hb_006788_120 Hb_027472_030 Hb_027472_030 Hb_021576_060--Hb_027472_030 Hb_035746_010 Hb_035746_010 Hb_021576_060--Hb_035746_010 Hb_000331_500 Hb_000331_500 Hb_021576_060--Hb_000331_500 Hb_012052_010 Hb_012052_010 Hb_021576_060--Hb_012052_010 Hb_120221_010 Hb_120221_010 Hb_021576_060--Hb_120221_010 Hb_001824_020 Hb_001824_020 Hb_021576_060--Hb_001824_020 Hb_073395_010 Hb_073395_010 Hb_002234_190--Hb_073395_010 Hb_037767_010 Hb_037767_010 Hb_002234_190--Hb_037767_010 Hb_006502_050 Hb_006502_050 Hb_002234_190--Hb_006502_050 Hb_081745_010 Hb_081745_010 Hb_002234_190--Hb_081745_010 Hb_002876_290 Hb_002876_290 Hb_002234_190--Hb_002876_290 Hb_001902_190 Hb_001902_190 Hb_002234_190--Hb_001902_190 Hb_004586_450--Hb_056768_010 Hb_000048_100 Hb_000048_100 Hb_004586_450--Hb_000048_100 Hb_001057_050 Hb_001057_050 Hb_004586_450--Hb_001057_050 Hb_000562_080 Hb_000562_080 Hb_004586_450--Hb_000562_080 Hb_004586_450--Hb_001047_140 Hb_029888_020 Hb_029888_020 Hb_004586_450--Hb_029888_020 Hb_005916_030 Hb_005916_030 Hb_137461_010--Hb_005916_030 Hb_049944_010 Hb_049944_010 Hb_137461_010--Hb_049944_010 Hb_000575_080 Hb_000575_080 Hb_137461_010--Hb_000575_080 Hb_075964_010 Hb_075964_010 Hb_137461_010--Hb_075964_010 Hb_000062_420 Hb_000062_420 Hb_137461_010--Hb_000062_420 Hb_001912_070 Hb_001912_070 Hb_137461_010--Hb_001912_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.135779 0 0.0352003 0.0384442 0.225415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.176935 0.0695402 0 0.0283778 0

CAGE analysis