Hb_087596_010

Information

Type -
Description -
Location Contig87596: 2142-4709
Sequence    

Annotation

kegg
ID rcu:RCOM_1045150
description TMV resistance protein N, putative
nr
ID XP_012075483.1
description PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]
swissprot
ID Q9SCX6
description Disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=1 SV=1
trembl
ID A0A067KFT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10938 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087596_010 0.0 - - PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]
2 Hb_000575_150 0.1496202122 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
3 Hb_000777_030 0.1545492933 - - histone h2a, putative [Ricinus communis]
4 Hb_004230_040 0.1677907918 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000016_100 0.1715418969 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
6 Hb_001969_090 0.1744143046 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
7 Hb_000914_090 0.1744806049 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
8 Hb_005052_020 0.1767462017 - - -
9 Hb_165026_020 0.1822146731 transcription factor TF Family: NAC hypothetical protein POPTR_0014s10300g [Populus trichocarpa]
10 Hb_002435_110 0.1830938384 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
11 Hb_000003_050 0.1836411087 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
12 Hb_000390_150 0.1853095644 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105632469 [Jatropha curcas]
13 Hb_006582_020 0.185466728 - - Zinc finger protein ZFPM1 [Theobroma cacao]
14 Hb_005843_150 0.1859461249 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
15 Hb_115241_010 0.1869847365 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
16 Hb_001477_130 0.1884576646 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
17 Hb_003683_040 0.1886109671 - - unnamed protein product [Coffea canephora]
18 Hb_000237_080 0.1891837666 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
19 Hb_001318_030 0.1892537914 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
20 Hb_010883_090 0.1911953811 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_087596_010 Hb_087596_010 Hb_000575_150 Hb_000575_150 Hb_087596_010--Hb_000575_150 Hb_000777_030 Hb_000777_030 Hb_087596_010--Hb_000777_030 Hb_004230_040 Hb_004230_040 Hb_087596_010--Hb_004230_040 Hb_000016_100 Hb_000016_100 Hb_087596_010--Hb_000016_100 Hb_001969_090 Hb_001969_090 Hb_087596_010--Hb_001969_090 Hb_000914_090 Hb_000914_090 Hb_087596_010--Hb_000914_090 Hb_000575_150--Hb_000777_030 Hb_000805_020 Hb_000805_020 Hb_000575_150--Hb_000805_020 Hb_000575_150--Hb_001969_090 Hb_007747_200 Hb_007747_200 Hb_000575_150--Hb_007747_200 Hb_004452_010 Hb_004452_010 Hb_000575_150--Hb_004452_010 Hb_010883_090 Hb_010883_090 Hb_000575_150--Hb_010883_090 Hb_000571_120 Hb_000571_120 Hb_000777_030--Hb_000571_120 Hb_004128_060 Hb_004128_060 Hb_000777_030--Hb_004128_060 Hb_001898_220 Hb_001898_220 Hb_000777_030--Hb_001898_220 Hb_000953_020 Hb_000953_020 Hb_000777_030--Hb_000953_020 Hb_000777_030--Hb_000805_020 Hb_002028_220 Hb_002028_220 Hb_004230_040--Hb_002028_220 Hb_000390_150 Hb_000390_150 Hb_004230_040--Hb_000390_150 Hb_000923_050 Hb_000923_050 Hb_004230_040--Hb_000923_050 Hb_001902_190 Hb_001902_190 Hb_004230_040--Hb_001902_190 Hb_028872_060 Hb_028872_060 Hb_004230_040--Hb_028872_060 Hb_002400_400 Hb_002400_400 Hb_004230_040--Hb_002400_400 Hb_004032_270 Hb_004032_270 Hb_000016_100--Hb_004032_270 Hb_009838_050 Hb_009838_050 Hb_000016_100--Hb_009838_050 Hb_006582_020 Hb_006582_020 Hb_000016_100--Hb_006582_020 Hb_002435_110 Hb_002435_110 Hb_000016_100--Hb_002435_110 Hb_000025_340 Hb_000025_340 Hb_000016_100--Hb_000025_340 Hb_000016_100--Hb_000390_150 Hb_001969_090--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_001969_090--Hb_000317_280 Hb_003687_240 Hb_003687_240 Hb_001969_090--Hb_003687_240 Hb_001969_090--Hb_010883_090 Hb_001969_090--Hb_000805_020 Hb_001205_070 Hb_001205_070 Hb_000914_090--Hb_001205_070 Hb_000879_010 Hb_000879_010 Hb_000914_090--Hb_000879_010 Hb_000196_050 Hb_000196_050 Hb_000914_090--Hb_000196_050 Hb_002811_230 Hb_002811_230 Hb_000914_090--Hb_002811_230 Hb_002909_070 Hb_002909_070 Hb_000914_090--Hb_002909_070 Hb_000914_090--Hb_006582_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.739947 3.11146 0.240998 0.337019 0.855309 2.29839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.5463 3.51423 2.37132 1.83686 0.155072

CAGE analysis