Hb_000575_150

Information

Type -
Description -
Location Contig575: 168979-172862
Sequence    

Annotation

kegg
ID pmum:103324604
description uncharacterized LOC103324604
nr
ID KDP27374.1
description hypothetical protein JCGZ_20198 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0004713
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49635: 168949-170108 , PASA_asmbl_49636: 170117-170950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000575_150 0.0 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
2 Hb_000777_030 0.0922835155 - - histone h2a, putative [Ricinus communis]
3 Hb_000805_020 0.0953689162 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
4 Hb_001969_090 0.1009428279 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
5 Hb_007747_200 0.1150098665 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
6 Hb_004452_010 0.1201568121 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
7 Hb_010883_090 0.1216292609 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
8 Hb_000002_050 0.1224600559 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
9 Hb_004128_060 0.1240680341 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
10 Hb_004586_340 0.1253622413 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
11 Hb_005052_020 0.1256738098 - - -
12 Hb_000571_120 0.1303634146 - - importin beta-1, putative [Ricinus communis]
13 Hb_034585_060 0.1314191522 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
14 Hb_000696_150 0.1316658268 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
15 Hb_000019_130 0.1319886669 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
16 Hb_006949_050 0.1321216756 - - unknown [Lotus japonicus]
17 Hb_000000_250 0.1335327131 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
18 Hb_021596_040 0.1344829932 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_006846_110 0.1349184075 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
20 Hb_007441_230 0.1349401759 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_000575_150 Hb_000575_150 Hb_000777_030 Hb_000777_030 Hb_000575_150--Hb_000777_030 Hb_000805_020 Hb_000805_020 Hb_000575_150--Hb_000805_020 Hb_001969_090 Hb_001969_090 Hb_000575_150--Hb_001969_090 Hb_007747_200 Hb_007747_200 Hb_000575_150--Hb_007747_200 Hb_004452_010 Hb_004452_010 Hb_000575_150--Hb_004452_010 Hb_010883_090 Hb_010883_090 Hb_000575_150--Hb_010883_090 Hb_000571_120 Hb_000571_120 Hb_000777_030--Hb_000571_120 Hb_004128_060 Hb_004128_060 Hb_000777_030--Hb_004128_060 Hb_001898_220 Hb_001898_220 Hb_000777_030--Hb_001898_220 Hb_000953_020 Hb_000953_020 Hb_000777_030--Hb_000953_020 Hb_000777_030--Hb_000805_020 Hb_004907_110 Hb_004907_110 Hb_000805_020--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_000805_020--Hb_002026_180 Hb_007441_230 Hb_007441_230 Hb_000805_020--Hb_007441_230 Hb_007416_320 Hb_007416_320 Hb_000805_020--Hb_007416_320 Hb_007441_200 Hb_007441_200 Hb_000805_020--Hb_007441_200 Hb_000805_020--Hb_010883_090 Hb_001969_090--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_001969_090--Hb_000317_280 Hb_003687_240 Hb_003687_240 Hb_001969_090--Hb_003687_240 Hb_001969_090--Hb_010883_090 Hb_001969_090--Hb_000805_020 Hb_000019_130 Hb_000019_130 Hb_007747_200--Hb_000019_130 Hb_007747_200--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_007747_200--Hb_006846_110 Hb_000343_130 Hb_000343_130 Hb_007747_200--Hb_000343_130 Hb_000002_050 Hb_000002_050 Hb_007747_200--Hb_000002_050 Hb_016901_010 Hb_016901_010 Hb_007747_200--Hb_016901_010 Hb_001956_200 Hb_001956_200 Hb_004452_010--Hb_001956_200 Hb_001266_060 Hb_001266_060 Hb_004452_010--Hb_001266_060 Hb_002636_050 Hb_002636_050 Hb_004452_010--Hb_002636_050 Hb_002678_020 Hb_002678_020 Hb_004452_010--Hb_002678_020 Hb_008500_010 Hb_008500_010 Hb_004452_010--Hb_008500_010 Hb_000427_050 Hb_000427_050 Hb_004452_010--Hb_000427_050 Hb_002631_060 Hb_002631_060 Hb_010883_090--Hb_002631_060 Hb_003994_060 Hb_003994_060 Hb_010883_090--Hb_003994_060 Hb_010883_090--Hb_003687_240 Hb_001892_020 Hb_001892_020 Hb_010883_090--Hb_001892_020 Hb_010883_090--Hb_004907_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.59651 4.41884 1.16601 0.794908 2.2674 5.87333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.11768 6.3026 6.28322 4.36988 1.59889

CAGE analysis