Hb_000777_030

Information

Type -
Description -
Location Contig777: 19657-21735
Sequence    

Annotation

kegg
ID rcu:RCOM_0826270
description histone h2a, putative
nr
ID XP_002529367.1
description histone h2a, putative [Ricinus communis]
swissprot
ID Q9C944
description Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1
trembl
ID B9STP8
description Histone H2A OS=Ricinus communis GN=RCOM_0826270 PE=3 SV=1
Gene Ontology
ID GO:0000786
description probable histone h2a variant 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57851: 19662-21795 , PASA_asmbl_57852: 19662-21717
cDNA
(Sanger)
(ID:Location)		 019_P10.ab1: 19949-21735 , 037_L05.ab1: 19948-21795

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000777_030 0.0 - - histone h2a, putative [Ricinus communis]
2 Hb_000575_150 0.0922835155 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
3 Hb_000571_120 0.1000894548 - - importin beta-1, putative [Ricinus communis]
4 Hb_004128_060 0.1075432118 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
5 Hb_001898_220 0.1096992684 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
6 Hb_000953_020 0.1124167233 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
7 Hb_000805_020 0.1131668559 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
8 Hb_032278_030 0.1186481106 - - protein phosphatase 2c, putative [Ricinus communis]
9 Hb_006949_040 0.1191656028 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_000768_040 0.1195431648 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
11 Hb_007441_230 0.1219609032 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
12 Hb_001969_090 0.1223624911 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
13 Hb_000173_340 0.1224276312 - - hypothetical protein JCGZ_02075 [Jatropha curcas]
14 Hb_006949_050 0.122824744 - - unknown [Lotus japonicus]
15 Hb_004453_050 0.1229303395 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
16 Hb_007532_030 0.1246796685 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
17 Hb_001477_130 0.1257152475 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
18 Hb_002137_020 0.1264792335 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_001635_060 0.1267438887 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
20 Hb_034585_060 0.1272949634 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]

Gene co-expression network

sample Hb_000777_030 Hb_000777_030 Hb_000575_150 Hb_000575_150 Hb_000777_030--Hb_000575_150 Hb_000571_120 Hb_000571_120 Hb_000777_030--Hb_000571_120 Hb_004128_060 Hb_004128_060 Hb_000777_030--Hb_004128_060 Hb_001898_220 Hb_001898_220 Hb_000777_030--Hb_001898_220 Hb_000953_020 Hb_000953_020 Hb_000777_030--Hb_000953_020 Hb_000805_020 Hb_000805_020 Hb_000777_030--Hb_000805_020 Hb_000575_150--Hb_000805_020 Hb_001969_090 Hb_001969_090 Hb_000575_150--Hb_001969_090 Hb_007747_200 Hb_007747_200 Hb_000575_150--Hb_007747_200 Hb_004452_010 Hb_004452_010 Hb_000575_150--Hb_004452_010 Hb_010883_090 Hb_010883_090 Hb_000575_150--Hb_010883_090 Hb_002026_180 Hb_002026_180 Hb_000571_120--Hb_002026_180 Hb_002137_020 Hb_002137_020 Hb_000571_120--Hb_002137_020 Hb_007441_200 Hb_007441_200 Hb_000571_120--Hb_007441_200 Hb_000571_120--Hb_000953_020 Hb_000768_040 Hb_000768_040 Hb_000571_120--Hb_000768_040 Hb_000571_120--Hb_000805_020 Hb_000554_020 Hb_000554_020 Hb_004128_060--Hb_000554_020 Hb_000406_220 Hb_000406_220 Hb_004128_060--Hb_000406_220 Hb_000032_290 Hb_000032_290 Hb_004128_060--Hb_000032_290 Hb_005357_030 Hb_005357_030 Hb_004128_060--Hb_005357_030 Hb_181235_010 Hb_181235_010 Hb_004128_060--Hb_181235_010 Hb_006949_040 Hb_006949_040 Hb_004128_060--Hb_006949_040 Hb_001635_060 Hb_001635_060 Hb_001898_220--Hb_001635_060 Hb_000000_250 Hb_000000_250 Hb_001898_220--Hb_000000_250 Hb_093084_050 Hb_093084_050 Hb_001898_220--Hb_093084_050 Hb_189003_080 Hb_189003_080 Hb_001898_220--Hb_189003_080 Hb_001898_220--Hb_002026_180 Hb_000041_050 Hb_000041_050 Hb_001898_220--Hb_000041_050 Hb_007416_280 Hb_007416_280 Hb_000953_020--Hb_007416_280 Hb_000510_130 Hb_000510_130 Hb_000953_020--Hb_000510_130 Hb_000953_020--Hb_002026_180 Hb_004032_150 Hb_004032_150 Hb_000953_020--Hb_004032_150 Hb_020956_020 Hb_020956_020 Hb_000953_020--Hb_020956_020 Hb_004907_110 Hb_004907_110 Hb_000805_020--Hb_004907_110 Hb_000805_020--Hb_002026_180 Hb_007441_230 Hb_007441_230 Hb_000805_020--Hb_007441_230 Hb_007416_320 Hb_007416_320 Hb_000805_020--Hb_007416_320 Hb_000805_020--Hb_007441_200 Hb_000805_020--Hb_010883_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.9521 102.263 17.6046 33.552 35.0664 127.897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
100.057 101.711 104.227 67.7391 31.6248

CAGE analysis