Hb_001205_070

Information

Type -
Description -
Location Contig1205: 39317-47869
Sequence    

Annotation

kegg
ID rcu:RCOM_0536720
description hypothetical protein
nr
ID XP_012071642.1
description PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
swissprot
ID Q8R5L3
description Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=2 SV=1
trembl
ID A0A067L3D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05311 PE=4 SV=1
Gene Ontology
ID GO:0005622
description vam6 vps39-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06325: 47620-47777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_070 0.0 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
2 Hb_018790_060 0.0965803226 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
3 Hb_002631_060 0.0987460741 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
4 Hb_001488_070 0.1009927428 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003376_350 0.1028156633 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
6 Hb_000413_010 0.1099947106 - - hypothetical protein JCGZ_21316 [Jatropha curcas]
7 Hb_000061_420 0.1107060223 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
8 Hb_000022_230 0.1126876073 - - hypothetical protein RCOM_0803470 [Ricinus communis]
9 Hb_000905_060 0.1137411172 - - protein with unknown function [Ricinus communis]
10 Hb_004738_100 0.1152689684 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
11 Hb_002085_110 0.1191549892 - - Protein transport protein Sec61 subunit beta, putative [Ricinus communis]
12 Hb_000343_160 0.1192853936 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
13 Hb_000109_160 0.1206164672 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
14 Hb_002685_170 0.1212127805 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
15 Hb_002813_040 0.1218373611 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
16 Hb_002301_140 0.1227026498 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
17 Hb_000705_210 0.1230395032 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
18 Hb_001481_120 0.1230692202 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
19 Hb_010883_090 0.1232222305 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
20 Hb_000926_330 0.1237191864 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001205_070 Hb_001205_070 Hb_018790_060 Hb_018790_060 Hb_001205_070--Hb_018790_060 Hb_002631_060 Hb_002631_060 Hb_001205_070--Hb_002631_060 Hb_001488_070 Hb_001488_070 Hb_001205_070--Hb_001488_070 Hb_003376_350 Hb_003376_350 Hb_001205_070--Hb_003376_350 Hb_000413_010 Hb_000413_010 Hb_001205_070--Hb_000413_010 Hb_000061_420 Hb_000061_420 Hb_001205_070--Hb_000061_420 Hb_018790_060--Hb_000061_420 Hb_022216_020 Hb_022216_020 Hb_018790_060--Hb_022216_020 Hb_000009_160 Hb_000009_160 Hb_018790_060--Hb_000009_160 Hb_001123_230 Hb_001123_230 Hb_018790_060--Hb_001123_230 Hb_000224_170 Hb_000224_170 Hb_018790_060--Hb_000224_170 Hb_005147_090 Hb_005147_090 Hb_018790_060--Hb_005147_090 Hb_010883_090 Hb_010883_090 Hb_002631_060--Hb_010883_090 Hb_004907_110 Hb_004907_110 Hb_002631_060--Hb_004907_110 Hb_002631_060--Hb_003376_350 Hb_007416_320 Hb_007416_320 Hb_002631_060--Hb_007416_320 Hb_000260_270 Hb_000260_270 Hb_002631_060--Hb_000260_270 Hb_000395_190 Hb_000395_190 Hb_002631_060--Hb_000395_190 Hb_002813_040 Hb_002813_040 Hb_001488_070--Hb_002813_040 Hb_000512_060 Hb_000512_060 Hb_001488_070--Hb_000512_060 Hb_000175_460 Hb_000175_460 Hb_001488_070--Hb_000175_460 Hb_031527_040 Hb_031527_040 Hb_001488_070--Hb_031527_040 Hb_005686_060 Hb_005686_060 Hb_001488_070--Hb_005686_060 Hb_000510_320 Hb_000510_320 Hb_001488_070--Hb_000510_320 Hb_003376_350--Hb_004907_110 Hb_000926_330 Hb_000926_330 Hb_003376_350--Hb_000926_330 Hb_004994_140 Hb_004994_140 Hb_003376_350--Hb_004994_140 Hb_000189_560 Hb_000189_560 Hb_003376_350--Hb_000189_560 Hb_007532_030 Hb_007532_030 Hb_003376_350--Hb_007532_030 Hb_001481_120 Hb_001481_120 Hb_000413_010--Hb_001481_120 Hb_001178_140 Hb_001178_140 Hb_000413_010--Hb_001178_140 Hb_000859_060 Hb_000859_060 Hb_000413_010--Hb_000859_060 Hb_001277_270 Hb_001277_270 Hb_000413_010--Hb_001277_270 Hb_001892_020 Hb_001892_020 Hb_000413_010--Hb_001892_020 Hb_003680_200 Hb_003680_200 Hb_000061_420--Hb_003680_200 Hb_000061_420--Hb_000224_170 Hb_000291_110 Hb_000291_110 Hb_000061_420--Hb_000291_110 Hb_000061_420--Hb_000926_330 Hb_181235_010 Hb_181235_010 Hb_000061_420--Hb_181235_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45541 1.57359 0.505011 1.28141 1.48384 1.30534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.62316 2.4018 2.19431 1.09957 0.116553

CAGE analysis