Hb_001912_070

Information

Type -
Description -
Location Contig1912: 146918-150287
Sequence    

Annotation

kegg
ID pop:POPTR_0003s03380g
description hypothetical protein
nr
ID XP_006385392.1
description hypothetical protein POPTR_0003s03380g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GLX1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s03380g PE=4 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19069: 146688-155500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001912_070 0.0 - - hypothetical protein POPTR_0003s03380g [Populus trichocarpa]
2 Hb_137461_010 0.2385081479 - - hypothetical protein POPTR_0011s03680g [Populus trichocarpa]
3 Hb_049944_010 0.2566367909 - - transducin family protein [Populus trichocarpa]
4 Hb_172970_010 0.2680143133 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
5 Hb_003206_020 0.2765840065 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
6 Hb_004137_080 0.2834255348 - - conserved hypothetical protein [Ricinus communis]
7 Hb_150379_010 0.2851943093 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
8 Hb_002205_050 0.2893863626 - - hypothetical protein JCGZ_03335 [Jatropha curcas]
9 Hb_001010_070 0.2912715965 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
10 Hb_002141_040 0.3038251737 - - -
11 Hb_003964_090 0.3065131248 - - PREDICTED: 14-3-3-like protein GF14 iota [Jatropha curcas]
12 Hb_001733_060 0.3075596832 - - PREDICTED: uncharacterized protein LOC104431099 [Eucalyptus grandis]
13 Hb_005916_030 0.3076086419 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
14 Hb_002419_030 0.3079444986 - - -
15 Hb_170698_010 0.3103867434 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
16 Hb_075964_010 0.312436126 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
17 Hb_000684_440 0.3136851958 - - hypothetical protein CICLE_v100111082mg, partial [Citrus clementina]
18 Hb_000932_100 0.314672883 - - -
19 Hb_083820_010 0.3149758785 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
20 Hb_175069_010 0.3199974542 - - hypothetical protein POPTR_0002s210401g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_001912_070 Hb_001912_070 Hb_137461_010 Hb_137461_010 Hb_001912_070--Hb_137461_010 Hb_049944_010 Hb_049944_010 Hb_001912_070--Hb_049944_010 Hb_172970_010 Hb_172970_010 Hb_001912_070--Hb_172970_010 Hb_003206_020 Hb_003206_020 Hb_001912_070--Hb_003206_020 Hb_004137_080 Hb_004137_080 Hb_001912_070--Hb_004137_080 Hb_150379_010 Hb_150379_010 Hb_001912_070--Hb_150379_010 Hb_005916_030 Hb_005916_030 Hb_137461_010--Hb_005916_030 Hb_137461_010--Hb_049944_010 Hb_000575_080 Hb_000575_080 Hb_137461_010--Hb_000575_080 Hb_075964_010 Hb_075964_010 Hb_137461_010--Hb_075964_010 Hb_000062_420 Hb_000062_420 Hb_137461_010--Hb_000062_420 Hb_005839_050 Hb_005839_050 Hb_049944_010--Hb_005839_050 Hb_003964_090 Hb_003964_090 Hb_049944_010--Hb_003964_090 Hb_049944_010--Hb_004137_080 Hb_027472_030 Hb_027472_030 Hb_049944_010--Hb_027472_030 Hb_012180_030 Hb_012180_030 Hb_172970_010--Hb_012180_030 Hb_002419_030 Hb_002419_030 Hb_172970_010--Hb_002419_030 Hb_004448_090 Hb_004448_090 Hb_172970_010--Hb_004448_090 Hb_000959_090 Hb_000959_090 Hb_172970_010--Hb_000959_090 Hb_002141_040 Hb_002141_040 Hb_172970_010--Hb_002141_040 Hb_012180_040 Hb_012180_040 Hb_172970_010--Hb_012180_040 Hb_020665_010 Hb_020665_010 Hb_003206_020--Hb_020665_010 Hb_007101_200 Hb_007101_200 Hb_003206_020--Hb_007101_200 Hb_145915_010 Hb_145915_010 Hb_003206_020--Hb_145915_010 Hb_009270_010 Hb_009270_010 Hb_003206_020--Hb_009270_010 Hb_000136_040 Hb_000136_040 Hb_003206_020--Hb_000136_040 Hb_002276_060 Hb_002276_060 Hb_003206_020--Hb_002276_060 Hb_005305_060 Hb_005305_060 Hb_004137_080--Hb_005305_060 Hb_028639_050 Hb_028639_050 Hb_004137_080--Hb_028639_050 Hb_000329_770 Hb_000329_770 Hb_004137_080--Hb_000329_770 Hb_007124_010 Hb_007124_010 Hb_004137_080--Hb_007124_010 Hb_001662_160 Hb_001662_160 Hb_004137_080--Hb_001662_160 Hb_012807_080 Hb_012807_080 Hb_004137_080--Hb_012807_080 Hb_000931_010 Hb_000931_010 Hb_150379_010--Hb_000931_010 Hb_001009_300 Hb_001009_300 Hb_150379_010--Hb_001009_300 Hb_184403_020 Hb_184403_020 Hb_150379_010--Hb_184403_020 Hb_020000_010 Hb_020000_010 Hb_150379_010--Hb_020000_010 Hb_004800_120 Hb_004800_120 Hb_150379_010--Hb_004800_120 Hb_001019_040 Hb_001019_040 Hb_150379_010--Hb_001019_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.723058 0 0 0.494657 2.42195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.548417 0.868246 0.568608 0.609663 1.22264

CAGE analysis