Hb_137461_010

Information

Type -
Description -
Location Contig137461: 9-602
Sequence    

Annotation

kegg
ID pop:POPTR_0011s03680g
description hypothetical protein
nr
ID XP_006377280.1
description hypothetical protein POPTR_0011s03680g [Populus trichocarpa]
swissprot
ID Q9LPZ3
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana GN=At1g11410 PE=3 SV=3
trembl
ID U5G0S1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s03680g PE=4 SV=1
Gene Ontology
ID GO:0004672
description s-locus-specific glycoprotein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137461_010 0.0 - - hypothetical protein POPTR_0011s03680g [Populus trichocarpa]
2 Hb_005916_030 0.1919627688 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
3 Hb_049944_010 0.2200119725 - - transducin family protein [Populus trichocarpa]
4 Hb_000575_080 0.2285321718 - - PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 isoform X1 [Jatropha curcas]
5 Hb_075964_010 0.2342209753 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
6 Hb_000062_420 0.2356820909 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001912_070 0.2385081479 - - hypothetical protein POPTR_0003s03380g [Populus trichocarpa]
8 Hb_150379_010 0.2412857876 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
9 Hb_000656_100 0.247240131 - - PREDICTED: uncharacterized protein LOC105633651 [Jatropha curcas]
10 Hb_003964_090 0.2475211051 - - PREDICTED: 14-3-3-like protein GF14 iota [Jatropha curcas]
11 Hb_002205_050 0.247998005 - - hypothetical protein JCGZ_03335 [Jatropha curcas]
12 Hb_005839_050 0.2483931456 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
13 Hb_001427_060 0.2500183932 - - -
14 Hb_032927_010 0.2520402649 - - -
15 Hb_077054_010 0.2531447986 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
16 Hb_112356_040 0.2603314933 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
17 Hb_035398_010 0.2604626136 - - hypothetical protein JCGZ_13029 [Jatropha curcas]
18 Hb_023732_090 0.2620837392 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_000777_030 0.2629075137 - - histone h2a, putative [Ricinus communis]
20 Hb_000608_180 0.2629966185 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_137461_010 Hb_137461_010 Hb_005916_030 Hb_005916_030 Hb_137461_010--Hb_005916_030 Hb_049944_010 Hb_049944_010 Hb_137461_010--Hb_049944_010 Hb_000575_080 Hb_000575_080 Hb_137461_010--Hb_000575_080 Hb_075964_010 Hb_075964_010 Hb_137461_010--Hb_075964_010 Hb_000062_420 Hb_000062_420 Hb_137461_010--Hb_000062_420 Hb_001912_070 Hb_001912_070 Hb_137461_010--Hb_001912_070 Hb_000995_050 Hb_000995_050 Hb_005916_030--Hb_000995_050 Hb_005916_030--Hb_000575_080 Hb_005260_020 Hb_005260_020 Hb_005916_030--Hb_005260_020 Hb_022461_010 Hb_022461_010 Hb_005916_030--Hb_022461_010 Hb_001054_130 Hb_001054_130 Hb_005916_030--Hb_001054_130 Hb_006502_080 Hb_006502_080 Hb_005916_030--Hb_006502_080 Hb_005839_050 Hb_005839_050 Hb_049944_010--Hb_005839_050 Hb_003964_090 Hb_003964_090 Hb_049944_010--Hb_003964_090 Hb_004137_080 Hb_004137_080 Hb_049944_010--Hb_004137_080 Hb_027472_030 Hb_027472_030 Hb_049944_010--Hb_027472_030 Hb_049944_010--Hb_001912_070 Hb_001307_140 Hb_001307_140 Hb_000575_080--Hb_001307_140 Hb_000270_020 Hb_000270_020 Hb_000575_080--Hb_000270_020 Hb_050455_010 Hb_050455_010 Hb_000575_080--Hb_050455_010 Hb_000088_020 Hb_000088_020 Hb_000575_080--Hb_000088_020 Hb_003299_090 Hb_003299_090 Hb_000575_080--Hb_003299_090 Hb_007317_190 Hb_007317_190 Hb_000575_080--Hb_007317_190 Hb_001427_060 Hb_001427_060 Hb_075964_010--Hb_001427_060 Hb_171789_010 Hb_171789_010 Hb_075964_010--Hb_171789_010 Hb_032927_010 Hb_032927_010 Hb_075964_010--Hb_032927_010 Hb_075964_010--Hb_005916_030 Hb_005965_010 Hb_005965_010 Hb_075964_010--Hb_005965_010 Hb_115477_010 Hb_115477_010 Hb_075964_010--Hb_115477_010 Hb_000364_150 Hb_000364_150 Hb_000062_420--Hb_000364_150 Hb_022092_090 Hb_022092_090 Hb_000062_420--Hb_022092_090 Hb_002197_030 Hb_002197_030 Hb_000062_420--Hb_002197_030 Hb_094947_010 Hb_094947_010 Hb_000062_420--Hb_094947_010 Hb_009543_030 Hb_009543_030 Hb_000062_420--Hb_009543_030 Hb_009558_020 Hb_009558_020 Hb_000062_420--Hb_009558_020 Hb_172970_010 Hb_172970_010 Hb_001912_070--Hb_172970_010 Hb_003206_020 Hb_003206_020 Hb_001912_070--Hb_003206_020 Hb_001912_070--Hb_004137_080 Hb_150379_010 Hb_150379_010 Hb_001912_070--Hb_150379_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0882594 0.442856 0 0.129705 0.130286 1.29646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.512503 0.644438 0.140677 0.297497 0.311278

CAGE analysis