Hb_094947_010

Information

Type -
Description -
Location Contig94947: 1-1143
Sequence    

Annotation

kegg
ID rcu:RCOM_0569510
description surfeit locus protein, putative
nr
ID XP_002530789.1
description surfeit locus protein, putative [Ricinus communis]
swissprot
ID Q9SE51
description Surfeit locus protein 1 OS=Arabidopsis thaliana GN=SURF1 PE=2 SV=1
trembl
ID B9SXS0
description Surfeit locus protein, putative OS=Ricinus communis GN=RCOM_0569510 PE=4 SV=1
Gene Ontology
ID GO:0016020
description surfeit locus protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63385: 360-1183
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094947_010 0.0 - - surfeit locus protein, putative [Ricinus communis]
2 Hb_000123_260 0.0969301318 - - PREDICTED: protein gar2 [Jatropha curcas]
3 Hb_004055_140 0.1007058627 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_001258_040 0.1059638101 - - hypothetical protein JCGZ_12578 [Jatropha curcas]
5 Hb_001488_330 0.1085282316 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
6 Hb_000274_020 0.1088173702 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
7 Hb_001157_060 0.1088661083 - - PREDICTED: putative nitric oxide synthase [Jatropha curcas]
8 Hb_143813_010 0.1094238931 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
9 Hb_008173_120 0.110604831 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004128_190 0.1148907217 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
11 Hb_000317_430 0.114899082 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
12 Hb_006692_030 0.1166043728 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
13 Hb_002636_160 0.116719154 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g13630 [Jatropha curcas]
14 Hb_118419_020 0.1169931006 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
15 Hb_000015_210 0.1185876162 - - PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]
16 Hb_000532_070 0.1186375282 - - PREDICTED: exosome complex component RRP42-like [Jatropha curcas]
17 Hb_003120_060 0.1187258501 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
18 Hb_007193_100 0.1192191375 - - syntaxin family protein [Populus trichocarpa]
19 Hb_002659_070 0.1194771189 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
20 Hb_001235_210 0.1195587212 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_094947_010 Hb_094947_010 Hb_000123_260 Hb_000123_260 Hb_094947_010--Hb_000123_260 Hb_004055_140 Hb_004055_140 Hb_094947_010--Hb_004055_140 Hb_001258_040 Hb_001258_040 Hb_094947_010--Hb_001258_040 Hb_001488_330 Hb_001488_330 Hb_094947_010--Hb_001488_330 Hb_000274_020 Hb_000274_020 Hb_094947_010--Hb_000274_020 Hb_001157_060 Hb_001157_060 Hb_094947_010--Hb_001157_060 Hb_004600_040 Hb_004600_040 Hb_000123_260--Hb_004600_040 Hb_007426_230 Hb_007426_230 Hb_000123_260--Hb_007426_230 Hb_000189_620 Hb_000189_620 Hb_000123_260--Hb_000189_620 Hb_001545_120 Hb_001545_120 Hb_000123_260--Hb_001545_120 Hb_003097_150 Hb_003097_150 Hb_000123_260--Hb_003097_150 Hb_004195_160 Hb_004195_160 Hb_000123_260--Hb_004195_160 Hb_002616_050 Hb_002616_050 Hb_004055_140--Hb_002616_050 Hb_028872_140 Hb_028872_140 Hb_004055_140--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_004055_140--Hb_033642_010 Hb_005117_010 Hb_005117_010 Hb_004055_140--Hb_005117_010 Hb_001454_140 Hb_001454_140 Hb_004055_140--Hb_001454_140 Hb_001266_080 Hb_001266_080 Hb_004055_140--Hb_001266_080 Hb_022693_060 Hb_022693_060 Hb_001258_040--Hb_022693_060 Hb_000635_250 Hb_000635_250 Hb_001258_040--Hb_000635_250 Hb_001258_040--Hb_001545_120 Hb_000000_250 Hb_000000_250 Hb_001258_040--Hb_000000_250 Hb_000022_250 Hb_000022_250 Hb_001258_040--Hb_000022_250 Hb_007426_030 Hb_007426_030 Hb_001258_040--Hb_007426_030 Hb_006332_020 Hb_006332_020 Hb_001488_330--Hb_006332_020 Hb_000977_070 Hb_000977_070 Hb_001488_330--Hb_000977_070 Hb_001488_330--Hb_000022_250 Hb_000554_020 Hb_000554_020 Hb_001488_330--Hb_000554_020 Hb_000032_290 Hb_000032_290 Hb_001488_330--Hb_000032_290 Hb_001488_330--Hb_004600_040 Hb_000751_130 Hb_000751_130 Hb_000274_020--Hb_000751_130 Hb_001109_020 Hb_001109_020 Hb_000274_020--Hb_001109_020 Hb_000087_020 Hb_000087_020 Hb_000274_020--Hb_000087_020 Hb_000046_110 Hb_000046_110 Hb_000274_020--Hb_000046_110 Hb_000444_050 Hb_000444_050 Hb_000274_020--Hb_000444_050 Hb_018133_060 Hb_018133_060 Hb_000274_020--Hb_018133_060 Hb_000538_200 Hb_000538_200 Hb_001157_060--Hb_000538_200 Hb_001157_060--Hb_004600_040 Hb_001157_060--Hb_003097_150 Hb_000803_150 Hb_000803_150 Hb_001157_060--Hb_000803_150 Hb_000421_260 Hb_000421_260 Hb_001157_060--Hb_000421_260 Hb_001157_060--Hb_000123_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.29638 1.60833 0.773484 1.65073 3.86247 9.5072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.99338 8.14569 4.99573 2.53777 2.47418

CAGE analysis