Hb_000062_420

Information

Type -
Description -
Location Contig62: 318327-321262
Sequence    

Annotation

kegg
ID rcu:RCOM_1081730
description hypothetical protein
nr
ID XP_002514990.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMM1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1081730 PE=4 SV=1
Gene Ontology
ID GO:0008152
description polyketide hydroxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_420 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000364_150 0.1161914126 - - -
3 Hb_022092_090 0.1334230092 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
4 Hb_002197_030 0.1345159701 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]
5 Hb_094947_010 0.1364289296 - - surfeit locus protein, putative [Ricinus communis]
6 Hb_009543_030 0.1381229816 - - prefoldin subunit 1 [Jatropha curcas]
7 Hb_009558_020 0.1408894319 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
8 Hb_007012_020 0.1409517393 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
9 Hb_002046_040 0.1449577173 - - PREDICTED: topless-related protein 4 [Malus domestica]
10 Hb_000329_770 0.1452770658 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000380_010 0.1485534432 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
12 Hb_012286_050 0.1491301871 - - PREDICTED: syntaxin-61 [Jatropha curcas]
13 Hb_004055_140 0.1491666658 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
14 Hb_000015_210 0.1492606087 - - PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]
15 Hb_000175_070 0.1501559049 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
16 Hb_000963_190 0.1508587342 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
17 Hb_000317_430 0.1512970614 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
18 Hb_137403_010 0.1531585612 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
19 Hb_001454_140 0.1532501926 - - protein arginine n-methyltransferase, putative [Ricinus communis]
20 Hb_012807_080 0.1532559464 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]

Gene co-expression network

sample Hb_000062_420 Hb_000062_420 Hb_000364_150 Hb_000364_150 Hb_000062_420--Hb_000364_150 Hb_022092_090 Hb_022092_090 Hb_000062_420--Hb_022092_090 Hb_002197_030 Hb_002197_030 Hb_000062_420--Hb_002197_030 Hb_094947_010 Hb_094947_010 Hb_000062_420--Hb_094947_010 Hb_009543_030 Hb_009543_030 Hb_000062_420--Hb_009543_030 Hb_009558_020 Hb_009558_020 Hb_000062_420--Hb_009558_020 Hb_002023_020 Hb_002023_020 Hb_000364_150--Hb_002023_020 Hb_000914_070 Hb_000914_070 Hb_000364_150--Hb_000914_070 Hb_137403_010 Hb_137403_010 Hb_000364_150--Hb_137403_010 Hb_039253_010 Hb_039253_010 Hb_000364_150--Hb_039253_010 Hb_004055_140 Hb_004055_140 Hb_000364_150--Hb_004055_140 Hb_009117_030 Hb_009117_030 Hb_000364_150--Hb_009117_030 Hb_000963_190 Hb_000963_190 Hb_022092_090--Hb_000963_190 Hb_011671_220 Hb_011671_220 Hb_022092_090--Hb_011671_220 Hb_001019_060 Hb_001019_060 Hb_022092_090--Hb_001019_060 Hb_029510_140 Hb_029510_140 Hb_022092_090--Hb_029510_140 Hb_022092_090--Hb_000364_150 Hb_005117_010 Hb_005117_010 Hb_022092_090--Hb_005117_010 Hb_000453_260 Hb_000453_260 Hb_002197_030--Hb_000453_260 Hb_006252_010 Hb_006252_010 Hb_002197_030--Hb_006252_010 Hb_002197_030--Hb_009543_030 Hb_002197_030--Hb_002023_020 Hb_000608_180 Hb_000608_180 Hb_002197_030--Hb_000608_180 Hb_002197_030--Hb_000364_150 Hb_000123_260 Hb_000123_260 Hb_094947_010--Hb_000123_260 Hb_094947_010--Hb_004055_140 Hb_001258_040 Hb_001258_040 Hb_094947_010--Hb_001258_040 Hb_001488_330 Hb_001488_330 Hb_094947_010--Hb_001488_330 Hb_000274_020 Hb_000274_020 Hb_094947_010--Hb_000274_020 Hb_001157_060 Hb_001157_060 Hb_094947_010--Hb_001157_060 Hb_000103_140 Hb_000103_140 Hb_009543_030--Hb_000103_140 Hb_000175_070 Hb_000175_070 Hb_009543_030--Hb_000175_070 Hb_000510_090 Hb_000510_090 Hb_009543_030--Hb_000510_090 Hb_007193_100 Hb_007193_100 Hb_009543_030--Hb_007193_100 Hb_004453_150 Hb_004453_150 Hb_009543_030--Hb_004453_150 Hb_000684_230 Hb_000684_230 Hb_009543_030--Hb_000684_230 Hb_009558_020--Hb_000175_070 Hb_006788_070 Hb_006788_070 Hb_009558_020--Hb_006788_070 Hb_000671_100 Hb_000671_100 Hb_009558_020--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_009558_020--Hb_010261_020 Hb_000365_360 Hb_000365_360 Hb_009558_020--Hb_000365_360 Hb_009558_020--Hb_007193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.886462 0.257496 0.0439082 0.342134 0.852228 2.83522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03565 1.32377 0.56674 0.639696 0.490267

CAGE analysis