Hb_000389_180

Information

Type -
Description -
Location Contig389: 380737-389804
Sequence    

Annotation

kegg
ID vvi:100245433
description putative disease resistance protein RGA3
nr
ID XP_012070311.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID P23799
description Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1
trembl
ID A0A067KTQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02621 PE=4 SV=1
Gene Ontology
ID GO:0016787
description leucine-rich repeat containing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38970: 379761-381129 , PASA_asmbl_38975: 386082-386636 , PASA_asmbl_38977: 388160-388334 , PASA_asmbl_38980: 389574-390079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000389_180 0.0 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_004316_120 0.1578625172 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Populus euphratica]
3 Hb_165026_020 0.1793286742 transcription factor TF Family: NAC hypothetical protein POPTR_0014s10300g [Populus trichocarpa]
4 Hb_003750_080 0.1861721546 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
5 Hb_005147_090 0.1922731603 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
6 Hb_008103_120 0.1928017888 - - hypothetical protein CISIN_1g009650mg [Citrus sinensis]
7 Hb_000592_050 0.1929218104 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
8 Hb_000009_320 0.1980348823 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66631 [Jatropha curcas]
9 Hb_010710_010 0.2000978991 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
10 Hb_025557_010 0.2025329025 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
11 Hb_000200_340 0.2038164772 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
12 Hb_000386_030 0.2045106206 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
13 Hb_001720_050 0.2051038393 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
14 Hb_001922_120 0.2062125979 - - hypothetical protein B456_004G136900 [Gossypium raimondii]
15 Hb_181235_010 0.2074880926 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
16 Hb_002890_030 0.2075817742 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
17 Hb_001226_030 0.2083181852 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
18 Hb_022092_120 0.2093863371 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
19 Hb_004807_030 0.2096810913 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
20 Hb_000291_110 0.2107877212 - - eukaryotic translation initiation factor [Hevea brasiliensis]

Gene co-expression network

sample Hb_000389_180 Hb_000389_180 Hb_004316_120 Hb_004316_120 Hb_000389_180--Hb_004316_120 Hb_165026_020 Hb_165026_020 Hb_000389_180--Hb_165026_020 Hb_003750_080 Hb_003750_080 Hb_000389_180--Hb_003750_080 Hb_005147_090 Hb_005147_090 Hb_000389_180--Hb_005147_090 Hb_008103_120 Hb_008103_120 Hb_000389_180--Hb_008103_120 Hb_000592_050 Hb_000592_050 Hb_000389_180--Hb_000592_050 Hb_189118_010 Hb_189118_010 Hb_004316_120--Hb_189118_010 Hb_010710_010 Hb_010710_010 Hb_004316_120--Hb_010710_010 Hb_000977_310 Hb_000977_310 Hb_004316_120--Hb_000977_310 Hb_001307_140 Hb_001307_140 Hb_004316_120--Hb_001307_140 Hb_000386_030 Hb_000386_030 Hb_004316_120--Hb_000386_030 Hb_001454_060 Hb_001454_060 Hb_004316_120--Hb_001454_060 Hb_003687_240 Hb_003687_240 Hb_165026_020--Hb_003687_240 Hb_040575_010 Hb_040575_010 Hb_165026_020--Hb_040575_010 Hb_010883_090 Hb_010883_090 Hb_165026_020--Hb_010883_090 Hb_001892_020 Hb_001892_020 Hb_165026_020--Hb_001892_020 Hb_001189_140 Hb_001189_140 Hb_165026_020--Hb_001189_140 Hb_000230_390 Hb_000230_390 Hb_165026_020--Hb_000230_390 Hb_003750_080--Hb_010710_010 Hb_000291_110 Hb_000291_110 Hb_003750_080--Hb_000291_110 Hb_000413_180 Hb_000413_180 Hb_003750_080--Hb_000413_180 Hb_000230_080 Hb_000230_080 Hb_003750_080--Hb_000230_080 Hb_001584_160 Hb_001584_160 Hb_003750_080--Hb_001584_160 Hb_000062_240 Hb_000062_240 Hb_003750_080--Hb_000062_240 Hb_001123_230 Hb_001123_230 Hb_005147_090--Hb_001123_230 Hb_000457_150 Hb_000457_150 Hb_005147_090--Hb_000457_150 Hb_018790_060 Hb_018790_060 Hb_005147_090--Hb_018790_060 Hb_000297_200 Hb_000297_200 Hb_005147_090--Hb_000297_200 Hb_005147_090--Hb_003750_080 Hb_000200_340 Hb_000200_340 Hb_005147_090--Hb_000200_340 Hb_008103_120--Hb_003750_080 Hb_008103_120--Hb_000291_110 Hb_093084_060 Hb_093084_060 Hb_008103_120--Hb_093084_060 Hb_005306_130 Hb_005306_130 Hb_008103_120--Hb_005306_130 Hb_181235_010 Hb_181235_010 Hb_008103_120--Hb_181235_010 Hb_000116_480 Hb_000116_480 Hb_008103_120--Hb_000116_480 Hb_000186_240 Hb_000186_240 Hb_000592_050--Hb_000186_240 Hb_000172_400 Hb_000172_400 Hb_000592_050--Hb_000172_400 Hb_000622_310 Hb_000622_310 Hb_000592_050--Hb_000622_310 Hb_000179_210 Hb_000179_210 Hb_000592_050--Hb_000179_210 Hb_000358_080 Hb_000358_080 Hb_000592_050--Hb_000358_080 Hb_000592_050--Hb_010710_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21645 10.5588 1.99163 1.96871 11.7972 14.9315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2531 6.99056 14.9721 5.00272 1.07843

CAGE analysis