Hb_000592_050

Information

Type -
Description -
Location Contig592: 93719-102402
Sequence    

Annotation

kegg
ID rcu:RCOM_0171060
description Golgin-84, putative
nr
ID XP_012068453.1
description PREDICTED: golgin candidate 2 [Jatropha curcas]
swissprot
ID B0F9L7
description Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1
trembl
ID A0A067LAL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03635 PE=4 SV=1
Gene Ontology
ID GO:0050896
description golgin candidate 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50288: 100137-102887 , PASA_asmbl_50289: 102367-102887
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000592_050 0.0 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
2 Hb_000186_240 0.0735441347 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
3 Hb_000172_400 0.091955409 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_000622_310 0.0950903051 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
5 Hb_000179_210 0.09669261 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
6 Hb_000358_080 0.097429068 - - Ribonuclease 3 [Gossypium arboreum]
7 Hb_010710_010 0.0992265737 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
8 Hb_001720_050 0.1003186867 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
9 Hb_011918_080 0.1012617844 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
10 Hb_000200_340 0.1047214669 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
11 Hb_000418_100 0.1056823097 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
12 Hb_007558_140 0.1060086987 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
13 Hb_098993_010 0.1070123254 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
14 Hb_003777_330 0.1081437677 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
15 Hb_003750_080 0.1094821196 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
16 Hb_182026_020 0.1095385684 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
17 Hb_010863_080 0.110255496 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
18 Hb_005839_120 0.1108644469 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
19 Hb_005147_090 0.111346976 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
20 Hb_003638_030 0.1122805009 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]

Gene co-expression network

sample Hb_000592_050 Hb_000592_050 Hb_000186_240 Hb_000186_240 Hb_000592_050--Hb_000186_240 Hb_000172_400 Hb_000172_400 Hb_000592_050--Hb_000172_400 Hb_000622_310 Hb_000622_310 Hb_000592_050--Hb_000622_310 Hb_000179_210 Hb_000179_210 Hb_000592_050--Hb_000179_210 Hb_000358_080 Hb_000358_080 Hb_000592_050--Hb_000358_080 Hb_010710_010 Hb_010710_010 Hb_000592_050--Hb_010710_010 Hb_000200_340 Hb_000200_340 Hb_000186_240--Hb_000200_340 Hb_000186_240--Hb_000179_210 Hb_010638_020 Hb_010638_020 Hb_000186_240--Hb_010638_020 Hb_000110_160 Hb_000110_160 Hb_000186_240--Hb_000110_160 Hb_010863_080 Hb_010863_080 Hb_000186_240--Hb_010863_080 Hb_002207_100 Hb_002207_100 Hb_000172_400--Hb_002207_100 Hb_000784_090 Hb_000784_090 Hb_000172_400--Hb_000784_090 Hb_001454_060 Hb_001454_060 Hb_000172_400--Hb_001454_060 Hb_000340_510 Hb_000340_510 Hb_000172_400--Hb_000340_510 Hb_001030_120 Hb_001030_120 Hb_000172_400--Hb_001030_120 Hb_003638_030 Hb_003638_030 Hb_000172_400--Hb_003638_030 Hb_000124_020 Hb_000124_020 Hb_000622_310--Hb_000124_020 Hb_000622_310--Hb_010863_080 Hb_000622_310--Hb_000186_240 Hb_000622_310--Hb_000172_400 Hb_000622_310--Hb_000179_210 Hb_006501_040 Hb_006501_040 Hb_000179_210--Hb_006501_040 Hb_178968_110 Hb_178968_110 Hb_000179_210--Hb_178968_110 Hb_001085_170 Hb_001085_170 Hb_000179_210--Hb_001085_170 Hb_000059_220 Hb_000059_220 Hb_000179_210--Hb_000059_220 Hb_000457_150 Hb_000457_150 Hb_000179_210--Hb_000457_150 Hb_003297_030 Hb_003297_030 Hb_000179_210--Hb_003297_030 Hb_000490_030 Hb_000490_030 Hb_000358_080--Hb_000490_030 Hb_007943_080 Hb_007943_080 Hb_000358_080--Hb_007943_080 Hb_001936_050 Hb_001936_050 Hb_000358_080--Hb_001936_050 Hb_000138_040 Hb_000138_040 Hb_000358_080--Hb_000138_040 Hb_006091_030 Hb_006091_030 Hb_000358_080--Hb_006091_030 Hb_000358_080--Hb_010710_010 Hb_000230_080 Hb_000230_080 Hb_010710_010--Hb_000230_080 Hb_000413_180 Hb_000413_180 Hb_010710_010--Hb_000413_180 Hb_003750_080 Hb_003750_080 Hb_010710_010--Hb_003750_080 Hb_002307_100 Hb_002307_100 Hb_010710_010--Hb_002307_100 Hb_000152_820 Hb_000152_820 Hb_010710_010--Hb_000152_820 Hb_001720_050 Hb_001720_050 Hb_010710_010--Hb_001720_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.73443 3.25883 1.27726 1.15331 8.39612 7.56293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.1543 4.97966 9.67871 2.25955 0.687787

CAGE analysis