Hb_013272_010

Information

Type -
Description -
Location Contig13272: 2982-6819
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013272_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_097730_010 0.1029467959 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
3 Hb_000889_090 0.3234006878 - - isocitrate lyase, putative [Ricinus communis]
4 Hb_002534_110 0.3236747855 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
5 Hb_004732_010 0.3329971274 - - -
6 Hb_010490_030 0.3418671712 - - -
7 Hb_124480_010 0.3481493354 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_001102_170 0.3620132567 - - PREDICTED: protein FLX-like 1 [Jatropha curcas]
9 Hb_010288_040 0.3626800614 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
10 Hb_003994_170 0.3740314609 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
11 Hb_001232_120 0.3794994562 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
12 Hb_000048_020 0.384251036 - - -
13 Hb_026747_020 0.3843426028 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_002289_020 0.3880553613 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
15 Hb_114893_050 0.3957633257 - - Uncharacterized protein isoform 3 [Theobroma cacao]
16 Hb_108884_010 0.3969246447 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Prunus mume]
17 Hb_037271_010 0.4017986852 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
18 Hb_075888_010 0.405571108 - - PREDICTED: 25S rRNA (cytosine-C(5))-methyltransferase nop2-like [Solanum lycopersicum]
19 Hb_002273_090 0.4131392266 - - -
20 Hb_074197_060 0.4134261492 - - PREDICTED: probable protein S-acyltransferase 14 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_013272_010 Hb_013272_010 Hb_097730_010 Hb_097730_010 Hb_013272_010--Hb_097730_010 Hb_000889_090 Hb_000889_090 Hb_013272_010--Hb_000889_090 Hb_002534_110 Hb_002534_110 Hb_013272_010--Hb_002534_110 Hb_004732_010 Hb_004732_010 Hb_013272_010--Hb_004732_010 Hb_010490_030 Hb_010490_030 Hb_013272_010--Hb_010490_030 Hb_124480_010 Hb_124480_010 Hb_013272_010--Hb_124480_010 Hb_097730_010--Hb_000889_090 Hb_097730_010--Hb_002534_110 Hb_097730_010--Hb_010490_030 Hb_097730_010--Hb_004732_010 Hb_097730_010--Hb_124480_010 Hb_000889_090--Hb_002534_110 Hb_000889_090--Hb_124480_010 Hb_002289_020 Hb_002289_020 Hb_000889_090--Hb_002289_020 Hb_000836_200 Hb_000836_200 Hb_000889_090--Hb_000836_200 Hb_002534_110--Hb_124480_010 Hb_002534_110--Hb_002289_020 Hb_002534_110--Hb_000836_200 Hb_000829_080 Hb_000829_080 Hb_004732_010--Hb_000829_080 Hb_010288_040 Hb_010288_040 Hb_004732_010--Hb_010288_040 Hb_141383_010 Hb_141383_010 Hb_004732_010--Hb_141383_010 Hb_007451_060 Hb_007451_060 Hb_004732_010--Hb_007451_060 Hb_000189_360 Hb_000189_360 Hb_004732_010--Hb_000189_360 Hb_115784_010 Hb_115784_010 Hb_004732_010--Hb_115784_010 Hb_074197_060 Hb_074197_060 Hb_010490_030--Hb_074197_060 Hb_005779_050 Hb_005779_050 Hb_010490_030--Hb_005779_050 Hb_007105_010 Hb_007105_010 Hb_010490_030--Hb_007105_010 Hb_004102_120 Hb_004102_120 Hb_010490_030--Hb_004102_120 Hb_062827_010 Hb_062827_010 Hb_010490_030--Hb_062827_010 Hb_003861_130 Hb_003861_130 Hb_010490_030--Hb_003861_130 Hb_124480_010--Hb_002289_020 Hb_004162_300 Hb_004162_300 Hb_124480_010--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_124480_010--Hb_027014_010 Hb_034050_010 Hb_034050_010 Hb_124480_010--Hb_034050_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0369897 0 0 0 0.0292243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0497128 0 0 0.0271327 0

CAGE analysis