Hb_003861_130

Information

Type -
Description -
Location Contig3861: 149153-151083
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003861_130 0.0 - - -
2 Hb_001623_030 0.0374942583 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_004102_120 0.044879665 - - -
4 Hb_135978_010 0.0715701096 - - hypothetical protein EUGRSUZ_J026621, partial [Eucalyptus grandis]
5 Hb_062827_010 0.1395508614 - - -
6 Hb_011692_030 0.1885082736 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
7 Hb_020763_020 0.1895161792 - - hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
8 Hb_003041_040 0.2245189449 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
9 Hb_010490_030 0.302064756 - - -
10 Hb_002719_070 0.3314838203 - - gibberellin 20-oxidase, putative [Ricinus communis]
11 Hb_032299_050 0.3346314673 - - -
12 Hb_000889_090 0.3383827676 - - isocitrate lyase, putative [Ricinus communis]
13 Hb_011609_160 0.3446345137 - - Lipase, putative [Ricinus communis]
14 Hb_007105_010 0.3729756694 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
15 Hb_000836_200 0.3743428447 - - -
16 Hb_004631_120 0.3757952763 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000645_100 0.3760015054 - - enzyme inhibitor, putative [Ricinus communis]
18 Hb_000092_160 0.382075524 - - PREDICTED: 18 kDa seed maturation protein [Populus euphratica]
19 Hb_000313_020 0.3856200707 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
20 Hb_002316_040 0.3866337517 - - trehalose-6-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003861_130 Hb_003861_130 Hb_001623_030 Hb_001623_030 Hb_003861_130--Hb_001623_030 Hb_004102_120 Hb_004102_120 Hb_003861_130--Hb_004102_120 Hb_135978_010 Hb_135978_010 Hb_003861_130--Hb_135978_010 Hb_062827_010 Hb_062827_010 Hb_003861_130--Hb_062827_010 Hb_011692_030 Hb_011692_030 Hb_003861_130--Hb_011692_030 Hb_020763_020 Hb_020763_020 Hb_003861_130--Hb_020763_020 Hb_001623_030--Hb_135978_010 Hb_001623_030--Hb_004102_120 Hb_001623_030--Hb_062827_010 Hb_001623_030--Hb_011692_030 Hb_001623_030--Hb_020763_020 Hb_004102_120--Hb_062827_010 Hb_004102_120--Hb_135978_010 Hb_004102_120--Hb_011692_030 Hb_004102_120--Hb_020763_020 Hb_135978_010--Hb_062827_010 Hb_135978_010--Hb_011692_030 Hb_135978_010--Hb_020763_020 Hb_062827_010--Hb_011692_030 Hb_062827_010--Hb_020763_020 Hb_003041_040 Hb_003041_040 Hb_062827_010--Hb_003041_040 Hb_011692_030--Hb_020763_020 Hb_011692_030--Hb_003041_040 Hb_020763_020--Hb_003041_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.119623 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109089 0 0 0 0

CAGE analysis