Hb_001623_030

Information

Type -
Description -
Location Contig1623: 14624-24565
Sequence    

Annotation

kegg
ID rcu:RCOM_1021480
description serine/threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002518140.1
description serine/threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID B9RWM1
description Serine/threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1021480 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_030 0.0 - - serine/threonine protein kinase, putative [Ricinus communis]
2 Hb_135978_010 0.0341086885 - - hypothetical protein EUGRSUZ_J026621, partial [Eucalyptus grandis]
3 Hb_003861_130 0.0374942583 - - -
4 Hb_004102_120 0.0823257512 - - -
5 Hb_062827_010 0.1767237424 - - -
6 Hb_011692_030 0.2254439942 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
7 Hb_020763_020 0.226446283 - - hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
8 Hb_003041_040 0.2612345751 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
9 Hb_010490_030 0.3135434579 - - -
10 Hb_002719_070 0.3193857181 - - gibberellin 20-oxidase, putative [Ricinus communis]
11 Hb_011609_160 0.3269875729 - - Lipase, putative [Ricinus communis]
12 Hb_032299_050 0.3363650715 - - -
13 Hb_000645_100 0.3433504115 - - enzyme inhibitor, putative [Ricinus communis]
14 Hb_000889_090 0.3486060459 - - isocitrate lyase, putative [Ricinus communis]
15 Hb_007105_010 0.365728444 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
16 Hb_000836_200 0.3706791534 - - -
17 Hb_002316_040 0.3814561529 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_004631_120 0.3919167881 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000092_160 0.3955586848 - - PREDICTED: 18 kDa seed maturation protein [Populus euphratica]
20 Hb_000313_020 0.4055951027 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]

Gene co-expression network

sample Hb_001623_030 Hb_001623_030 Hb_135978_010 Hb_135978_010 Hb_001623_030--Hb_135978_010 Hb_003861_130 Hb_003861_130 Hb_001623_030--Hb_003861_130 Hb_004102_120 Hb_004102_120 Hb_001623_030--Hb_004102_120 Hb_062827_010 Hb_062827_010 Hb_001623_030--Hb_062827_010 Hb_011692_030 Hb_011692_030 Hb_001623_030--Hb_011692_030 Hb_020763_020 Hb_020763_020 Hb_001623_030--Hb_020763_020 Hb_135978_010--Hb_003861_130 Hb_135978_010--Hb_004102_120 Hb_135978_010--Hb_062827_010 Hb_135978_010--Hb_011692_030 Hb_135978_010--Hb_020763_020 Hb_003861_130--Hb_004102_120 Hb_003861_130--Hb_062827_010 Hb_003861_130--Hb_011692_030 Hb_003861_130--Hb_020763_020 Hb_004102_120--Hb_062827_010 Hb_004102_120--Hb_011692_030 Hb_004102_120--Hb_020763_020 Hb_062827_010--Hb_011692_030 Hb_062827_010--Hb_020763_020 Hb_003041_040 Hb_003041_040 Hb_062827_010--Hb_003041_040 Hb_011692_030--Hb_020763_020 Hb_011692_030--Hb_003041_040 Hb_020763_020--Hb_003041_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0297991 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0227577 0 0 0 0

CAGE analysis