Hb_003041_040

Information

Type -
Description -
Location Contig3041: 82623-85295
Sequence    

Annotation

kegg
ID bvg:104908276
description uncharacterized LOC104908276
nr
ID XP_010695673.1
description PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003041_040 0.0 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
2 Hb_020763_020 0.0356156664 - - hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
3 Hb_011692_030 0.0366372585 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
4 Hb_062827_010 0.0860154082 - - -
5 Hb_004102_120 0.1803046543 - - -
6 Hb_003861_130 0.2245189449 - - -
7 Hb_001623_030 0.2612345751 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_074197_060 0.2808409326 - - PREDICTED: probable protein S-acyltransferase 14 isoform X1 [Populus euphratica]
9 Hb_135978_010 0.2944290088 - - hypothetical protein EUGRSUZ_J026621, partial [Eucalyptus grandis]
10 Hb_010490_030 0.3206339655 - - -
11 Hb_000313_020 0.3230654998 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
12 Hb_001205_010 0.3308403493 - - -
13 Hb_004631_120 0.3434621477 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000889_090 0.3534087332 - - isocitrate lyase, putative [Ricinus communis]
15 Hb_000092_160 0.3657264234 - - PREDICTED: 18 kDa seed maturation protein [Populus euphratica]
16 Hb_008725_160 0.3839822084 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000007_050 0.3847492461 - - -
18 Hb_000075_050 0.3847492461 - - -
19 Hb_000076_010 0.3847492461 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
20 Hb_000103_500 0.3847492461 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003041_040 Hb_003041_040 Hb_020763_020 Hb_020763_020 Hb_003041_040--Hb_020763_020 Hb_011692_030 Hb_011692_030 Hb_003041_040--Hb_011692_030 Hb_062827_010 Hb_062827_010 Hb_003041_040--Hb_062827_010 Hb_004102_120 Hb_004102_120 Hb_003041_040--Hb_004102_120 Hb_003861_130 Hb_003861_130 Hb_003041_040--Hb_003861_130 Hb_001623_030 Hb_001623_030 Hb_003041_040--Hb_001623_030 Hb_020763_020--Hb_011692_030 Hb_020763_020--Hb_062827_010 Hb_020763_020--Hb_004102_120 Hb_020763_020--Hb_003861_130 Hb_020763_020--Hb_001623_030 Hb_011692_030--Hb_062827_010 Hb_011692_030--Hb_004102_120 Hb_011692_030--Hb_003861_130 Hb_011692_030--Hb_001623_030 Hb_062827_010--Hb_004102_120 Hb_062827_010--Hb_003861_130 Hb_062827_010--Hb_001623_030 Hb_004102_120--Hb_003861_130 Hb_004102_120--Hb_001623_030 Hb_135978_010 Hb_135978_010 Hb_004102_120--Hb_135978_010 Hb_003861_130--Hb_001623_030 Hb_003861_130--Hb_135978_010 Hb_001623_030--Hb_135978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0080707 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0222232 0 0 0 0

CAGE analysis