Hb_097730_010

Information

Type -
Description -
Location Contig97730: 1352-2698
Sequence    

Annotation

kegg
ID tcc:TCM_039262
description Gag protease polyprotein
nr
ID XP_012491230.1
description PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097730_010 0.0 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
2 Hb_013272_010 0.1029467959 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_000889_090 0.2519250007 - - isocitrate lyase, putative [Ricinus communis]
4 Hb_002534_110 0.2756594766 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
5 Hb_010490_030 0.3047052626 - - -
6 Hb_004732_010 0.3096273818 - - -
7 Hb_124480_010 0.3223918977 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_010288_040 0.3517501216 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
9 Hb_001102_170 0.35419991 - - PREDICTED: protein FLX-like 1 [Jatropha curcas]
10 Hb_002316_040 0.3638285619 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
11 Hb_000836_200 0.3716303966 - - -
12 Hb_002289_020 0.3754722827 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_108884_010 0.3937550548 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Prunus mume]
14 Hb_007105_010 0.3959846477 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
15 Hb_074197_060 0.3962945855 - - PREDICTED: probable protein S-acyltransferase 14 isoform X1 [Populus euphratica]
16 Hb_002411_140 0.3987006889 - - PREDICTED: cytosolic sulfotransferase 15-like [Jatropha curcas]
17 Hb_003994_170 0.4007629488 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
18 Hb_002719_070 0.4026409793 - - gibberellin 20-oxidase, putative [Ricinus communis]
19 Hb_004102_120 0.4039239118 - - -
20 Hb_114893_050 0.4051368365 - - Uncharacterized protein isoform 3 [Theobroma cacao]

Gene co-expression network

sample Hb_097730_010 Hb_097730_010 Hb_013272_010 Hb_013272_010 Hb_097730_010--Hb_013272_010 Hb_000889_090 Hb_000889_090 Hb_097730_010--Hb_000889_090 Hb_002534_110 Hb_002534_110 Hb_097730_010--Hb_002534_110 Hb_010490_030 Hb_010490_030 Hb_097730_010--Hb_010490_030 Hb_004732_010 Hb_004732_010 Hb_097730_010--Hb_004732_010 Hb_124480_010 Hb_124480_010 Hb_097730_010--Hb_124480_010 Hb_013272_010--Hb_000889_090 Hb_013272_010--Hb_002534_110 Hb_013272_010--Hb_004732_010 Hb_013272_010--Hb_010490_030 Hb_013272_010--Hb_124480_010 Hb_000889_090--Hb_002534_110 Hb_000889_090--Hb_124480_010 Hb_002289_020 Hb_002289_020 Hb_000889_090--Hb_002289_020 Hb_000836_200 Hb_000836_200 Hb_000889_090--Hb_000836_200 Hb_002534_110--Hb_124480_010 Hb_002534_110--Hb_002289_020 Hb_002534_110--Hb_000836_200 Hb_074197_060 Hb_074197_060 Hb_010490_030--Hb_074197_060 Hb_005779_050 Hb_005779_050 Hb_010490_030--Hb_005779_050 Hb_007105_010 Hb_007105_010 Hb_010490_030--Hb_007105_010 Hb_004102_120 Hb_004102_120 Hb_010490_030--Hb_004102_120 Hb_062827_010 Hb_062827_010 Hb_010490_030--Hb_062827_010 Hb_003861_130 Hb_003861_130 Hb_010490_030--Hb_003861_130 Hb_000829_080 Hb_000829_080 Hb_004732_010--Hb_000829_080 Hb_010288_040 Hb_010288_040 Hb_004732_010--Hb_010288_040 Hb_141383_010 Hb_141383_010 Hb_004732_010--Hb_141383_010 Hb_007451_060 Hb_007451_060 Hb_004732_010--Hb_007451_060 Hb_000189_360 Hb_000189_360 Hb_004732_010--Hb_000189_360 Hb_115784_010 Hb_115784_010 Hb_004732_010--Hb_115784_010 Hb_124480_010--Hb_002289_020 Hb_004162_300 Hb_004162_300 Hb_124480_010--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_124480_010--Hb_027014_010 Hb_034050_010 Hb_034050_010 Hb_124480_010--Hb_034050_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0328286 0 0 0 0.0169969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0375387 0 0 0.0118156 0

CAGE analysis