Hb_000889_090

Information

Type -
Description -
Location Contig889: 147516-149337
Sequence    

Annotation

kegg
ID rcu:RCOM_1362920
description isocitrate lyase, putative (EC:4.1.3.1)
nr
ID XP_002529741.1
description isocitrate lyase, putative [Ricinus communis]
swissprot
ID P15479
description Isocitrate lyase OS=Ricinus communis PE=2 SV=1
trembl
ID B9SUS2
description Isocitrate lyase OS=Ricinus communis GN=RCOM_1362920 PE=3 SV=1
Gene Ontology
ID GO:0009514
description isocitrate lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61547: 145393-149668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000889_090 0.0 - - isocitrate lyase, putative [Ricinus communis]
2 Hb_002534_110 0.1024634682 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
3 Hb_124480_010 0.1896247579 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
4 Hb_097730_010 0.2519250007 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
5 Hb_002289_020 0.2853931544 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_000836_200 0.3017915653 - - -
7 Hb_013272_010 0.3234006878 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_004102_120 0.3306876479 - - -
9 Hb_062827_010 0.3320356882 - - -
10 Hb_003861_130 0.3383827676 - - -
11 Hb_011692_030 0.3421441955 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
12 Hb_020763_020 0.3424166708 - - hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
13 Hb_001623_030 0.3486060459 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_003041_040 0.3534087332 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
15 Hb_135978_010 0.3606251696 - - hypothetical protein EUGRSUZ_J026621, partial [Eucalyptus grandis]
16 Hb_004732_010 0.3981589186 - - -
17 Hb_002316_040 0.4011590659 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_001059_020 0.4059633566 - - PREDICTED: FBD-associated F-box protein At4g10400-like [Malus domestica]
19 Hb_108884_010 0.4110037873 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Prunus mume]
20 Hb_010490_030 0.4240554105 - - -

Gene co-expression network

sample Hb_000889_090 Hb_000889_090 Hb_002534_110 Hb_002534_110 Hb_000889_090--Hb_002534_110 Hb_124480_010 Hb_124480_010 Hb_000889_090--Hb_124480_010 Hb_097730_010 Hb_097730_010 Hb_000889_090--Hb_097730_010 Hb_002289_020 Hb_002289_020 Hb_000889_090--Hb_002289_020 Hb_000836_200 Hb_000836_200 Hb_000889_090--Hb_000836_200 Hb_013272_010 Hb_013272_010 Hb_000889_090--Hb_013272_010 Hb_002534_110--Hb_124480_010 Hb_002534_110--Hb_002289_020 Hb_002534_110--Hb_097730_010 Hb_002534_110--Hb_013272_010 Hb_002534_110--Hb_000836_200 Hb_124480_010--Hb_002289_020 Hb_004162_300 Hb_004162_300 Hb_124480_010--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_124480_010--Hb_027014_010 Hb_034050_010 Hb_034050_010 Hb_124480_010--Hb_034050_010 Hb_097730_010--Hb_013272_010 Hb_010490_030 Hb_010490_030 Hb_097730_010--Hb_010490_030 Hb_004732_010 Hb_004732_010 Hb_097730_010--Hb_004732_010 Hb_097730_010--Hb_124480_010 Hb_048110_010 Hb_048110_010 Hb_002289_020--Hb_048110_010 Hb_000875_100 Hb_000875_100 Hb_002289_020--Hb_000875_100 Hb_001014_200 Hb_001014_200 Hb_002289_020--Hb_001014_200 Hb_032299_050 Hb_032299_050 Hb_000836_200--Hb_032299_050 Hb_000836_200--Hb_004732_010 Hb_001059_020 Hb_001059_020 Hb_000836_200--Hb_001059_020 Hb_006452_130 Hb_006452_130 Hb_000836_200--Hb_006452_130 Hb_013272_010--Hb_004732_010 Hb_013272_010--Hb_010490_030 Hb_013272_010--Hb_124480_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0191975 0 0 0 0.0113733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0264227 0 0 0 0

CAGE analysis