Hb_048110_010

Information

Type -
Description -
Location Contig48110: 3-525
Sequence    

Annotation

kegg
ID rcu:RCOM_0609820
description ubiquitin-protein ligase, putative
nr
ID XP_012089368.1
description PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
swissprot
ID Q9FZ70
description F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1
trembl
ID A0A067JIH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23564 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box fbd lrr-repeat protein at1g13570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048110_010 0.0 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
2 Hb_002289_020 0.3166419089 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_124480_010 0.3312192039 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
4 Hb_108884_010 0.3339425982 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Prunus mume]
5 Hb_002135_040 0.3484231612 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
6 Hb_003849_090 0.3549749146 - - -
7 Hb_071923_010 0.3588999915 - - -
8 Hb_011537_120 0.3649545388 - - -
9 Hb_160203_010 0.3670847472 - - -
10 Hb_002534_110 0.3690459151 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
11 Hb_000996_170 0.3698776738 - - unknown [Glycine max]
12 Hb_002194_070 0.3706416167 - - -
13 Hb_000377_100 0.3741871185 - - LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like protein [Theobroma cacao]
14 Hb_003304_040 0.3821455868 - - hypothetical protein CICLE_v10003343mg, partial [Citrus clementina]
15 Hb_000161_120 0.3832446265 - - unnamed protein product [Vitis vinifera]
16 Hb_000025_100 0.3852377966 - - -
17 Hb_002796_030 0.3897326026 - - -
18 Hb_000617_170 0.3898413683 - - -
19 Hb_001712_050 0.3909346679 - - PREDICTED: uncharacterized protein LOC105641944 [Jatropha curcas]
20 Hb_000875_100 0.3936922136 - - hypothetical protein JCGZ_04800 [Jatropha curcas]

Gene co-expression network

sample Hb_048110_010 Hb_048110_010 Hb_002289_020 Hb_002289_020 Hb_048110_010--Hb_002289_020 Hb_124480_010 Hb_124480_010 Hb_048110_010--Hb_124480_010 Hb_108884_010 Hb_108884_010 Hb_048110_010--Hb_108884_010 Hb_002135_040 Hb_002135_040 Hb_048110_010--Hb_002135_040 Hb_003849_090 Hb_003849_090 Hb_048110_010--Hb_003849_090 Hb_071923_010 Hb_071923_010 Hb_048110_010--Hb_071923_010 Hb_002289_020--Hb_124480_010 Hb_002534_110 Hb_002534_110 Hb_002289_020--Hb_002534_110 Hb_000889_090 Hb_000889_090 Hb_002289_020--Hb_000889_090 Hb_000875_100 Hb_000875_100 Hb_002289_020--Hb_000875_100 Hb_001014_200 Hb_001014_200 Hb_002289_020--Hb_001014_200 Hb_124480_010--Hb_002534_110 Hb_124480_010--Hb_000889_090 Hb_004162_300 Hb_004162_300 Hb_124480_010--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_124480_010--Hb_027014_010 Hb_034050_010 Hb_034050_010 Hb_124480_010--Hb_034050_010 Hb_001017_120 Hb_001017_120 Hb_108884_010--Hb_001017_120 Hb_027913_020 Hb_027913_020 Hb_108884_010--Hb_027913_020 Hb_021576_060 Hb_021576_060 Hb_108884_010--Hb_021576_060 Hb_002234_190 Hb_002234_190 Hb_108884_010--Hb_002234_190 Hb_004586_450 Hb_004586_450 Hb_108884_010--Hb_004586_450 Hb_137461_010 Hb_137461_010 Hb_108884_010--Hb_137461_010 Hb_002796_030 Hb_002796_030 Hb_002135_040--Hb_002796_030 Hb_018247_010 Hb_018247_010 Hb_002135_040--Hb_018247_010 Hb_004098_030 Hb_004098_030 Hb_002135_040--Hb_004098_030 Hb_126838_020 Hb_126838_020 Hb_002135_040--Hb_126838_020 Hb_070820_010 Hb_070820_010 Hb_002135_040--Hb_070820_010 Hb_011525_020 Hb_011525_020 Hb_002135_040--Hb_011525_020 Hb_004958_040 Hb_004958_040 Hb_003849_090--Hb_004958_040 Hb_187459_010 Hb_187459_010 Hb_003849_090--Hb_187459_010 Hb_001907_090 Hb_001907_090 Hb_003849_090--Hb_001907_090 Hb_075745_010 Hb_075745_010 Hb_003849_090--Hb_075745_010 Hb_000684_480 Hb_000684_480 Hb_003849_090--Hb_000684_480 Hb_001579_040 Hb_001579_040 Hb_003849_090--Hb_001579_040 Hb_001722_020 Hb_001722_020 Hb_071923_010--Hb_001722_020 Hb_002249_110 Hb_002249_110 Hb_071923_010--Hb_002249_110 Hb_088774_010 Hb_088774_010 Hb_071923_010--Hb_088774_010 Hb_144898_010 Hb_144898_010 Hb_071923_010--Hb_144898_010 Hb_000295_090 Hb_000295_090 Hb_071923_010--Hb_000295_090 Hb_003297_020 Hb_003297_020 Hb_071923_010--Hb_003297_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.393067 0.176522 0.187683 0.265907 1.66997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.998184 0 0 0 0

CAGE analysis