Hb_074197_060

Information

Type -
Description -
Location Contig74197: 74657-77888
Sequence    

Annotation

kegg
ID pop:POPTR_0003s11520g
description POPTRDRAFT_799885; hypothetical protein
nr
ID XP_011029092.1
description PREDICTED: probable protein S-acyltransferase 14 isoform X1 [Populus euphratica]
swissprot
ID Q8VYP5
description Probable protein S-acyltransferase 14 OS=Arabidopsis thaliana GN=PAT14 PE=2 SV=1
trembl
ID B9GVT0
description S-acyltransferase OS=Populus trichocarpa GN=POPTR_0003s11520g PE=3 SV=2
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074197_060 0.0 - - PREDICTED: probable protein S-acyltransferase 14 isoform X1 [Populus euphratica]
2 Hb_010490_030 0.2359825761 - - -
3 Hb_049901_010 0.2700425567 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
4 Hb_034454_020 0.2700771939 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_003041_040 0.2808409326 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
6 Hb_000425_050 0.2850674733 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
7 Hb_009563_020 0.2851056899 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_007287_020 0.2851783365 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
9 Hb_001147_100 0.2852760781 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_004800_040 0.2855066929 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
11 Hb_175651_010 0.285845392 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_110798_010 0.2858700832 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_011457_010 0.2863059222 - - nucleolar protein nop56, putative [Ricinus communis]
14 Hb_032252_040 0.2875983773 - - -
15 Hb_032107_010 0.2877478014 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
16 Hb_000513_010 0.288749824 - - -
17 Hb_000232_050 0.2908224783 - - -
18 Hb_136367_010 0.2939600854 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
19 Hb_020763_020 0.295618776 - - hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
20 Hb_011692_030 0.2960880555 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_074197_060 Hb_074197_060 Hb_010490_030 Hb_010490_030 Hb_074197_060--Hb_010490_030 Hb_049901_010 Hb_049901_010 Hb_074197_060--Hb_049901_010 Hb_034454_020 Hb_034454_020 Hb_074197_060--Hb_034454_020 Hb_003041_040 Hb_003041_040 Hb_074197_060--Hb_003041_040 Hb_000425_050 Hb_000425_050 Hb_074197_060--Hb_000425_050 Hb_009563_020 Hb_009563_020 Hb_074197_060--Hb_009563_020 Hb_005779_050 Hb_005779_050 Hb_010490_030--Hb_005779_050 Hb_007105_010 Hb_007105_010 Hb_010490_030--Hb_007105_010 Hb_004102_120 Hb_004102_120 Hb_010490_030--Hb_004102_120 Hb_062827_010 Hb_062827_010 Hb_010490_030--Hb_062827_010 Hb_003861_130 Hb_003861_130 Hb_010490_030--Hb_003861_130 Hb_049901_010--Hb_034454_020 Hb_049901_010--Hb_000425_050 Hb_049901_010--Hb_009563_020 Hb_007287_020 Hb_007287_020 Hb_049901_010--Hb_007287_020 Hb_001147_100 Hb_001147_100 Hb_049901_010--Hb_001147_100 Hb_004800_040 Hb_004800_040 Hb_049901_010--Hb_004800_040 Hb_034454_020--Hb_000425_050 Hb_034454_020--Hb_009563_020 Hb_034454_020--Hb_007287_020 Hb_034454_020--Hb_001147_100 Hb_034454_020--Hb_004800_040 Hb_020763_020 Hb_020763_020 Hb_003041_040--Hb_020763_020 Hb_011692_030 Hb_011692_030 Hb_003041_040--Hb_011692_030 Hb_003041_040--Hb_062827_010 Hb_003041_040--Hb_004102_120 Hb_003041_040--Hb_003861_130 Hb_001623_030 Hb_001623_030 Hb_003041_040--Hb_001623_030 Hb_000425_050--Hb_009563_020 Hb_000425_050--Hb_007287_020 Hb_000425_050--Hb_001147_100 Hb_000425_050--Hb_004800_040 Hb_175651_010 Hb_175651_010 Hb_000425_050--Hb_175651_010 Hb_110798_010 Hb_110798_010 Hb_000425_050--Hb_110798_010 Hb_009563_020--Hb_007287_020 Hb_009563_020--Hb_001147_100 Hb_009563_020--Hb_004800_040 Hb_009563_020--Hb_175651_010 Hb_009563_020--Hb_110798_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0976731 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.519624 0 0 0.0904634 0

CAGE analysis