Hb_007105_010

Information

Type -
Description -
Location Contig7105: 42678-45068
Sequence    

Annotation

kegg
ID mdm:103455579
description uncharacterized LOC103455579
nr
ID XP_008393387.1
description PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
swissprot
ID -
description -
trembl
ID S8C3P3
description Uncharacterized protein OS=Genlisea aurea GN=M569_13371 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007105_010 0.0 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
2 Hb_006907_120 0.1272707574 - - PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
3 Hb_001189_060 0.2372169923 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
4 Hb_010288_040 0.2590979293 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
5 Hb_005779_050 0.2621533242 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
6 Hb_000077_240 0.2635584196 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
7 Hb_003398_030 0.2702123112 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
8 Hb_000186_210 0.2869018691 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
9 Hb_010490_030 0.2897553016 - - -
10 Hb_002063_030 0.2911317295 - - -
11 Hb_003100_010 0.301677763 - - PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
12 Hb_002719_070 0.3234981621 - - gibberellin 20-oxidase, putative [Ricinus communis]
13 Hb_002316_040 0.3242150276 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
14 Hb_001902_150 0.3245921793 - - PREDICTED: cytokinin hydroxylase-like [Jatropha curcas]
15 Hb_003018_070 0.3278798813 - - SAUR family protein, partial [Theobroma cacao]
16 Hb_109268_010 0.3351022216 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
17 Hb_117240_010 0.3355547557 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
18 Hb_002180_010 0.3376017124 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_001863_440 0.3386948876 - - Nodulin-26, putative [Ricinus communis]
20 Hb_001894_090 0.3403533706 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH90 [Jatropha curcas]

Gene co-expression network

sample Hb_007105_010 Hb_007105_010 Hb_006907_120 Hb_006907_120 Hb_007105_010--Hb_006907_120 Hb_001189_060 Hb_001189_060 Hb_007105_010--Hb_001189_060 Hb_010288_040 Hb_010288_040 Hb_007105_010--Hb_010288_040 Hb_005779_050 Hb_005779_050 Hb_007105_010--Hb_005779_050 Hb_000077_240 Hb_000077_240 Hb_007105_010--Hb_000077_240 Hb_003398_030 Hb_003398_030 Hb_007105_010--Hb_003398_030 Hb_006907_120--Hb_000077_240 Hb_006907_120--Hb_003398_030 Hb_006907_120--Hb_001189_060 Hb_000186_210 Hb_000186_210 Hb_006907_120--Hb_000186_210 Hb_006907_120--Hb_010288_040 Hb_003018_070 Hb_003018_070 Hb_001189_060--Hb_003018_070 Hb_001189_060--Hb_000186_210 Hb_002063_030 Hb_002063_030 Hb_001189_060--Hb_002063_030 Hb_001902_150 Hb_001902_150 Hb_001189_060--Hb_001902_150 Hb_004732_010 Hb_004732_010 Hb_010288_040--Hb_004732_010 Hb_010288_040--Hb_005779_050 Hb_002180_010 Hb_002180_010 Hb_010288_040--Hb_002180_010 Hb_000454_060 Hb_000454_060 Hb_010288_040--Hb_000454_060 Hb_109268_010 Hb_109268_010 Hb_005779_050--Hb_109268_010 Hb_001022_060 Hb_001022_060 Hb_005779_050--Hb_001022_060 Hb_005779_050--Hb_006907_120 Hb_128051_010 Hb_128051_010 Hb_005779_050--Hb_128051_010 Hb_000077_240--Hb_003398_030 Hb_111347_010 Hb_111347_010 Hb_000077_240--Hb_111347_010 Hb_000077_240--Hb_128051_010 Hb_000077_240--Hb_109268_010 Hb_003398_030--Hb_111347_010 Hb_008289_050 Hb_008289_050 Hb_003398_030--Hb_008289_050 Hb_003398_030--Hb_128051_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.149698 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0839016 0.0329985 0 0.0396775 0

CAGE analysis