Hb_007777_020

Information

Type -
Description -
Location Contig7777: 5210-5659
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16020g
description POPTRDRAFT_1072288; hypothetical protein
nr
ID KDP28639.1
description hypothetical protein JCGZ_14410 [Jatropha curcas]
swissprot
ID Q8GWP5
description Riboflavin biosynthesis protein PYRD, chloroplastic OS=Arabidopsis thaliana GN=PYRD PE=1 SV=1
trembl
ID A0A067KA00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14410 PE=4 SV=1
Gene Ontology
ID GO:0016787
description riboflavin biosynthesis protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007777_020 0.0 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
2 Hb_031866_060 0.1553511753 - - PREDICTED: uncharacterized protein LOC105642381 isoform X2 [Jatropha curcas]
3 Hb_033642_100 0.1711895872 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Prunus mume]
4 Hb_000866_420 0.1732646983 - - Remorin, putative [Ricinus communis]
5 Hb_041392_010 0.1734823224 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
6 Hb_012132_040 0.1744192722 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
7 Hb_000159_110 0.1758627723 - - PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]
8 Hb_000486_060 0.1769753522 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
9 Hb_150360_010 0.1773470272 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
10 Hb_000198_070 0.1783314241 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
11 Hb_002739_080 0.1817445743 - - cystathionine beta-lyase, putative [Ricinus communis]
12 Hb_083043_010 0.1826159222 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
13 Hb_001341_050 0.1837484252 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
14 Hb_000606_080 0.1846197162 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
15 Hb_001575_040 0.1855619592 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 isoform X2 [Jatropha curcas]
16 Hb_003581_020 0.188001414 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
17 Hb_003656_140 0.1889685233 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
18 Hb_007765_010 0.1891029332 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002685_120 0.1896967592 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001863_260 0.1897584128 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007777_020 Hb_007777_020 Hb_031866_060 Hb_031866_060 Hb_007777_020--Hb_031866_060 Hb_033642_100 Hb_033642_100 Hb_007777_020--Hb_033642_100 Hb_000866_420 Hb_000866_420 Hb_007777_020--Hb_000866_420 Hb_041392_010 Hb_041392_010 Hb_007777_020--Hb_041392_010 Hb_012132_040 Hb_012132_040 Hb_007777_020--Hb_012132_040 Hb_000159_110 Hb_000159_110 Hb_007777_020--Hb_000159_110 Hb_002374_050 Hb_002374_050 Hb_031866_060--Hb_002374_050 Hb_004934_070 Hb_004934_070 Hb_031866_060--Hb_004934_070 Hb_006663_070 Hb_006663_070 Hb_031866_060--Hb_006663_070 Hb_005862_010 Hb_005862_010 Hb_031866_060--Hb_005862_010 Hb_010381_120 Hb_010381_120 Hb_031866_060--Hb_010381_120 Hb_007741_020 Hb_007741_020 Hb_031866_060--Hb_007741_020 Hb_001488_340 Hb_001488_340 Hb_033642_100--Hb_001488_340 Hb_002411_180 Hb_002411_180 Hb_033642_100--Hb_002411_180 Hb_001863_260 Hb_001863_260 Hb_033642_100--Hb_001863_260 Hb_000198_070 Hb_000198_070 Hb_033642_100--Hb_000198_070 Hb_001882_040 Hb_001882_040 Hb_033642_100--Hb_001882_040 Hb_001575_040 Hb_001575_040 Hb_000866_420--Hb_001575_040 Hb_013405_040 Hb_013405_040 Hb_000866_420--Hb_013405_040 Hb_002475_050 Hb_002475_050 Hb_000866_420--Hb_002475_050 Hb_007765_010 Hb_007765_010 Hb_000866_420--Hb_007765_010 Hb_000606_080 Hb_000606_080 Hb_000866_420--Hb_000606_080 Hb_001673_010 Hb_001673_010 Hb_000866_420--Hb_001673_010 Hb_033312_140 Hb_033312_140 Hb_041392_010--Hb_033312_140 Hb_003656_140 Hb_003656_140 Hb_041392_010--Hb_003656_140 Hb_023001_050 Hb_023001_050 Hb_041392_010--Hb_023001_050 Hb_041392_010--Hb_000606_080 Hb_150204_010 Hb_150204_010 Hb_041392_010--Hb_150204_010 Hb_150360_010 Hb_150360_010 Hb_041392_010--Hb_150360_010 Hb_007668_040 Hb_007668_040 Hb_012132_040--Hb_007668_040 Hb_001341_050 Hb_001341_050 Hb_012132_040--Hb_001341_050 Hb_000364_060 Hb_000364_060 Hb_012132_040--Hb_000364_060 Hb_002942_080 Hb_002942_080 Hb_012132_040--Hb_002942_080 Hb_003581_020 Hb_003581_020 Hb_012132_040--Hb_003581_020 Hb_032496_030 Hb_032496_030 Hb_012132_040--Hb_032496_030 Hb_002411_130 Hb_002411_130 Hb_000159_110--Hb_002411_130 Hb_083043_010 Hb_083043_010 Hb_000159_110--Hb_083043_010 Hb_009119_030 Hb_009119_030 Hb_000159_110--Hb_009119_030 Hb_000160_220 Hb_000160_220 Hb_000159_110--Hb_000160_220 Hb_001752_040 Hb_001752_040 Hb_000159_110--Hb_001752_040 Hb_058702_010 Hb_058702_010 Hb_000159_110--Hb_058702_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.41401 0.534121 1.67039 0.981063 1.5278 5.50108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76568 0.378246 0.4171 0.689309 0.459343

CAGE analysis