Hb_002352_040

Information

Type -
Description -
Location Contig2352: 67305-68277
Sequence    

Annotation

kegg
ID rcu:RCOM_0616160
description hypothetical protein
nr
ID XP_012084871.1
description PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
swissprot
ID Q3EBZ2
description F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1
trembl
ID A0A067JTA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20944 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002352_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
2 Hb_056531_040 0.2557452293 - - PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]
3 Hb_002194_080 0.2812162308 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
4 Hb_072775_010 0.2846641917 - - 60S ribosomal L37-3 -like protein [Gossypium arboreum]
5 Hb_086287_020 0.2991349537 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
6 Hb_071923_010 0.3015158189 - - -
7 Hb_004449_190 0.3039658725 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
8 Hb_011537_120 0.3156641918 - - -
9 Hb_000248_010 0.3198450437 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
10 Hb_088774_010 0.3219987837 - - -
11 Hb_001722_020 0.3269072325 - - -
12 Hb_124567_010 0.3272386911 - - -
13 Hb_000493_020 0.3297975818 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
14 Hb_003012_080 0.3310374533 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_002249_110 0.3321572981 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
16 Hb_110486_010 0.3327041899 - - -
17 Hb_103351_010 0.3369214283 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
18 Hb_001235_060 0.33864524 - - -
19 Hb_000122_140 0.3389937278 - - -
20 Hb_000059_090 0.3414213758 - - -

Gene co-expression network

sample Hb_002352_040 Hb_002352_040 Hb_056531_040 Hb_056531_040 Hb_002352_040--Hb_056531_040 Hb_002194_080 Hb_002194_080 Hb_002352_040--Hb_002194_080 Hb_072775_010 Hb_072775_010 Hb_002352_040--Hb_072775_010 Hb_086287_020 Hb_086287_020 Hb_002352_040--Hb_086287_020 Hb_071923_010 Hb_071923_010 Hb_002352_040--Hb_071923_010 Hb_004449_190 Hb_004449_190 Hb_002352_040--Hb_004449_190 Hb_000059_090 Hb_000059_090 Hb_056531_040--Hb_000059_090 Hb_000115_270 Hb_000115_270 Hb_056531_040--Hb_000115_270 Hb_056531_040--Hb_086287_020 Hb_000002_030 Hb_000002_030 Hb_056531_040--Hb_000002_030 Hb_124567_010 Hb_124567_010 Hb_056531_040--Hb_124567_010 Hb_053582_010 Hb_053582_010 Hb_056531_040--Hb_053582_010 Hb_002194_080--Hb_004449_190 Hb_004413_040 Hb_004413_040 Hb_002194_080--Hb_004413_040 Hb_005489_030 Hb_005489_030 Hb_002194_080--Hb_005489_030 Hb_000377_100 Hb_000377_100 Hb_002194_080--Hb_000377_100 Hb_007777_020 Hb_007777_020 Hb_002194_080--Hb_007777_020 Hb_005595_020 Hb_005595_020 Hb_072775_010--Hb_005595_020 Hb_072775_010--Hb_056531_040 Hb_166548_010 Hb_166548_010 Hb_072775_010--Hb_166548_010 Hb_001981_080 Hb_001981_080 Hb_072775_010--Hb_001981_080 Hb_102699_010 Hb_102699_010 Hb_072775_010--Hb_102699_010 Hb_098842_010 Hb_098842_010 Hb_086287_020--Hb_098842_010 Hb_010997_050 Hb_010997_050 Hb_086287_020--Hb_010997_050 Hb_086287_020--Hb_000059_090 Hb_000004_140 Hb_000004_140 Hb_086287_020--Hb_000004_140 Hb_011537_120 Hb_011537_120 Hb_086287_020--Hb_011537_120 Hb_001722_020 Hb_001722_020 Hb_071923_010--Hb_001722_020 Hb_002249_110 Hb_002249_110 Hb_071923_010--Hb_002249_110 Hb_088774_010 Hb_088774_010 Hb_071923_010--Hb_088774_010 Hb_144898_010 Hb_144898_010 Hb_071923_010--Hb_144898_010 Hb_000295_090 Hb_000295_090 Hb_071923_010--Hb_000295_090 Hb_003297_020 Hb_003297_020 Hb_071923_010--Hb_003297_020 Hb_000608_060 Hb_000608_060 Hb_004449_190--Hb_000608_060 Hb_001711_070 Hb_001711_070 Hb_004449_190--Hb_001711_070 Hb_004931_080 Hb_004931_080 Hb_004449_190--Hb_004931_080 Hb_004449_190--Hb_007777_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0368243 0 0.0296122 0 0.0345673 0.296196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0851365 0 0 0.027275 0

CAGE analysis