Hb_002231_050

Information

Type -
Description -
Location Contig2231: 38828-39731
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002231_050 0.0 - - -
2 Hb_011401_010 0.0653555118 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
3 Hb_001722_030 0.1077210413 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105123768 isoform X2 [Populus euphratica]
4 Hb_106159_010 0.2699430196 - - -
5 Hb_007792_010 0.3084448724 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
6 Hb_002928_100 0.3089216379 - - -
7 Hb_115784_010 0.3232770846 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
8 Hb_012522_020 0.3415195887 - - -
9 Hb_048125_010 0.3415438875 - - PREDICTED: uncharacterized protein LOC104104928 [Nicotiana tomentosiformis]
10 Hb_019677_010 0.3416011019 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_000058_220 0.3416081061 - - hypothetical protein, partial [Staphylococcus aureus]
12 Hb_001831_020 0.3416305296 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
13 Hb_008031_020 0.341643387 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
14 Hb_010812_090 0.3442097744 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
15 Hb_011707_010 0.3450039151 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_076693_010 0.3450296628 - - PREDICTED: beta-glucosidase 11-like isoform X2 [Jatropha curcas]
17 Hb_092027_010 0.3451113022 - - PREDICTED: uncharacterized protein LOC105761643 [Gossypium raimondii]
18 Hb_007713_020 0.3455292982 - - -
19 Hb_004532_010 0.3564339844 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
20 Hb_000599_060 0.3572418199 - - PREDICTED: legumin A-like [Jatropha curcas]

Gene co-expression network

sample Hb_002231_050 Hb_002231_050 Hb_011401_010 Hb_011401_010 Hb_002231_050--Hb_011401_010 Hb_001722_030 Hb_001722_030 Hb_002231_050--Hb_001722_030 Hb_106159_010 Hb_106159_010 Hb_002231_050--Hb_106159_010 Hb_007792_010 Hb_007792_010 Hb_002231_050--Hb_007792_010 Hb_002928_100 Hb_002928_100 Hb_002231_050--Hb_002928_100 Hb_115784_010 Hb_115784_010 Hb_002231_050--Hb_115784_010 Hb_011401_010--Hb_001722_030 Hb_011401_010--Hb_106159_010 Hb_011401_010--Hb_002928_100 Hb_011401_010--Hb_007792_010 Hb_011401_010--Hb_115784_010 Hb_001722_030--Hb_106159_010 Hb_001722_030--Hb_002928_100 Hb_001722_030--Hb_007792_010 Hb_002205_200 Hb_002205_200 Hb_001722_030--Hb_002205_200 Hb_004413_040 Hb_004413_040 Hb_106159_010--Hb_004413_040 Hb_106159_010--Hb_002205_200 Hb_000875_100 Hb_000875_100 Hb_106159_010--Hb_000875_100 Hb_001741_050 Hb_001741_050 Hb_007792_010--Hb_001741_050 Hb_153231_040 Hb_153231_040 Hb_007792_010--Hb_153231_040 Hb_002307_130 Hb_002307_130 Hb_007792_010--Hb_002307_130 Hb_005496_060 Hb_005496_060 Hb_007792_010--Hb_005496_060 Hb_001195_590 Hb_001195_590 Hb_007792_010--Hb_001195_590 Hb_048610_010 Hb_048610_010 Hb_002928_100--Hb_048610_010 Hb_026766_010 Hb_026766_010 Hb_002928_100--Hb_026766_010 Hb_029162_020 Hb_029162_020 Hb_002928_100--Hb_029162_020 Hb_002094_020 Hb_002094_020 Hb_002928_100--Hb_002094_020 Hb_005539_300 Hb_005539_300 Hb_002928_100--Hb_005539_300 Hb_070820_010 Hb_070820_010 Hb_115784_010--Hb_070820_010 Hb_000086_330 Hb_000086_330 Hb_115784_010--Hb_000086_330 Hb_141383_010 Hb_141383_010 Hb_115784_010--Hb_141383_010 Hb_002301_240 Hb_002301_240 Hb_115784_010--Hb_002301_240 Hb_000931_030 Hb_000931_030 Hb_115784_010--Hb_000931_030 Hb_004732_010 Hb_004732_010 Hb_115784_010--Hb_004732_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110993 0 0 0 0 0.102651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.26467 0 0 0 0

CAGE analysis