Hb_029162_020

Information

Type -
Description -
Location Contig29162: 18115-19656
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029162_020 0.0 - - -
2 Hb_048610_010 0.0194140455 - - -
3 Hb_144101_010 0.2212570253 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
4 Hb_001230_010 0.2212960203 - - -
5 Hb_031862_050 0.2337245964 - - Cell division cycle protein, putative [Ricinus communis]
6 Hb_002007_290 0.2369222892 - - -
7 Hb_168418_010 0.2757101323 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
8 Hb_036285_010 0.2778632379 - - -
9 Hb_002205_200 0.284665695 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
10 Hb_010588_010 0.2874017398 - - -
11 Hb_002928_100 0.2884065315 - - -
12 Hb_002094_020 0.3028945524 - - PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
13 Hb_174107_010 0.3072804563 - - PREDICTED: uncharacterized protein LOC105775323 [Gossypium raimondii]
14 Hb_002307_070 0.3175051478 - - hypothetical protein JCGZ_14841 [Jatropha curcas]
15 Hb_027751_030 0.3190842049 - - -
16 Hb_000928_230 0.3238213019 - - conserved hypothetical protein [Ricinus communis]
17 Hb_026766_010 0.327320894 - - -
18 Hb_166548_010 0.3282388275 - - hypothetical protein JCGZ_09681 [Jatropha curcas]
19 Hb_021888_110 0.3291796282 - - -
20 Hb_004060_010 0.3331229463 - - -

Gene co-expression network

sample Hb_029162_020 Hb_029162_020 Hb_048610_010 Hb_048610_010 Hb_029162_020--Hb_048610_010 Hb_144101_010 Hb_144101_010 Hb_029162_020--Hb_144101_010 Hb_001230_010 Hb_001230_010 Hb_029162_020--Hb_001230_010 Hb_031862_050 Hb_031862_050 Hb_029162_020--Hb_031862_050 Hb_002007_290 Hb_002007_290 Hb_029162_020--Hb_002007_290 Hb_168418_010 Hb_168418_010 Hb_029162_020--Hb_168418_010 Hb_048610_010--Hb_001230_010 Hb_048610_010--Hb_144101_010 Hb_048610_010--Hb_002007_290 Hb_048610_010--Hb_031862_050 Hb_048610_010--Hb_168418_010 Hb_021888_110 Hb_021888_110 Hb_144101_010--Hb_021888_110 Hb_036285_010 Hb_036285_010 Hb_144101_010--Hb_036285_010 Hb_000025_100 Hb_000025_100 Hb_144101_010--Hb_000025_100 Hb_000025_060 Hb_000025_060 Hb_144101_010--Hb_000025_060 Hb_001230_010--Hb_002007_290 Hb_166786_030 Hb_166786_030 Hb_001230_010--Hb_166786_030 Hb_002094_020 Hb_002094_020 Hb_001230_010--Hb_002094_020 Hb_000928_230 Hb_000928_230 Hb_001230_010--Hb_000928_230 Hb_001230_010--Hb_031862_050 Hb_017111_010 Hb_017111_010 Hb_001230_010--Hb_017111_010 Hb_031862_050--Hb_002007_290 Hb_031862_050--Hb_168418_010 Hb_000046_020 Hb_000046_020 Hb_031862_050--Hb_000046_020 Hb_002007_290--Hb_166786_030 Hb_002007_290--Hb_002094_020 Hb_002007_290--Hb_000928_230 Hb_002007_290--Hb_017111_010 Hb_010588_010 Hb_010588_010 Hb_168418_010--Hb_010588_010 Hb_113733_010 Hb_113733_010 Hb_168418_010--Hb_113733_010 Hb_002750_020 Hb_002750_020 Hb_168418_010--Hb_002750_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.267616 0 0 0 0 0.199746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.076783 0.0603659 0 0 0

CAGE analysis