Hb_031862_050

Information

Type -
Description -
Location Contig31862: 88047-95725
Sequence    

Annotation

kegg
ID rcu:RCOM_0884430
description Cell division cycle protein, putative
nr
ID XP_002522614.1
description Cell division cycle protein, putative [Ricinus communis]
swissprot
ID A7RFT2
description Cell division cycle protein 123 homolog OS=Nematostella vectensis GN=cdc123 PE=3 SV=1
trembl
ID B9S9E5
description Cell division cycle protein, putative OS=Ricinus communis GN=RCOM_0884430 PE=4 SV=1
Gene Ontology
ID GO:0006950
description cell division cycle protein 123 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_050 0.0 - - Cell division cycle protein, putative [Ricinus communis]
2 Hb_001230_010 0.2061595935 - - -
3 Hb_002007_290 0.2137325454 - - -
4 Hb_168418_010 0.2203747792 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
5 Hb_000046_020 0.2310330427 - - -
6 Hb_029162_020 0.2337245964 - - -
7 Hb_048610_010 0.2403790711 - - -
8 Hb_027751_030 0.251356459 - - -
9 Hb_010588_010 0.2661703895 - - -
10 Hb_026766_010 0.2677673438 - - -
11 Hb_002843_190 0.2745887275 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 7 isoform X1 [Jatropha curcas]
12 Hb_010128_110 0.2866756632 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
13 Hb_003756_010 0.2875476057 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
14 Hb_065642_010 0.2886792278 - - -
15 Hb_007849_030 0.293852773 - - l-allo-threonine aldolase, putative [Ricinus communis]
16 Hb_004060_010 0.2954308439 - - -
17 Hb_000699_020 0.2957534667 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
18 Hb_002094_020 0.2961487746 - - PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
19 Hb_000284_160 0.2977342659 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
20 Hb_166786_030 0.3017514476 - - PREDICTED: uncharacterized protein LOC105775425 [Gossypium raimondii]

Gene co-expression network

sample Hb_031862_050 Hb_031862_050 Hb_001230_010 Hb_001230_010 Hb_031862_050--Hb_001230_010 Hb_002007_290 Hb_002007_290 Hb_031862_050--Hb_002007_290 Hb_168418_010 Hb_168418_010 Hb_031862_050--Hb_168418_010 Hb_000046_020 Hb_000046_020 Hb_031862_050--Hb_000046_020 Hb_029162_020 Hb_029162_020 Hb_031862_050--Hb_029162_020 Hb_048610_010 Hb_048610_010 Hb_031862_050--Hb_048610_010 Hb_001230_010--Hb_002007_290 Hb_166786_030 Hb_166786_030 Hb_001230_010--Hb_166786_030 Hb_002094_020 Hb_002094_020 Hb_001230_010--Hb_002094_020 Hb_000928_230 Hb_000928_230 Hb_001230_010--Hb_000928_230 Hb_017111_010 Hb_017111_010 Hb_001230_010--Hb_017111_010 Hb_002007_290--Hb_166786_030 Hb_002007_290--Hb_002094_020 Hb_002007_290--Hb_000928_230 Hb_002007_290--Hb_017111_010 Hb_010588_010 Hb_010588_010 Hb_168418_010--Hb_010588_010 Hb_113733_010 Hb_113733_010 Hb_168418_010--Hb_113733_010 Hb_168418_010--Hb_029162_020 Hb_002750_020 Hb_002750_020 Hb_168418_010--Hb_002750_020 Hb_168418_010--Hb_048610_010 Hb_000221_100 Hb_000221_100 Hb_000046_020--Hb_000221_100 Hb_145761_010 Hb_145761_010 Hb_000046_020--Hb_145761_010 Hb_065642_010 Hb_065642_010 Hb_000046_020--Hb_065642_010 Hb_002742_010 Hb_002742_010 Hb_000046_020--Hb_002742_010 Hb_001741_050 Hb_001741_050 Hb_000046_020--Hb_001741_050 Hb_086859_010 Hb_086859_010 Hb_000046_020--Hb_086859_010 Hb_029162_020--Hb_048610_010 Hb_144101_010 Hb_144101_010 Hb_029162_020--Hb_144101_010 Hb_029162_020--Hb_001230_010 Hb_029162_020--Hb_002007_290 Hb_048610_010--Hb_001230_010 Hb_048610_010--Hb_144101_010 Hb_048610_010--Hb_002007_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30511 0.096064 0 0 0.0261618 0.464808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.418905 0.564724 0 0 0

CAGE analysis