Hb_144101_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig144101: 1957-2579
Sequence    

Annotation

kegg
ID vvi:104877911
description putative disease resistance RPP13-like protein 1
nr
ID XP_010645668.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID F6HVF3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0139g00210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144101_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
2 Hb_021888_110 0.2118935251 - - -
3 Hb_029162_020 0.2212570253 - - -
4 Hb_048610_010 0.2261202368 - - -
5 Hb_036285_010 0.2419627404 - - -
6 Hb_000025_100 0.2609097259 - - -
7 Hb_000025_060 0.2657342529 - - unknown [Populus trichocarpa]
8 Hb_166548_010 0.2661052325 - - hypothetical protein JCGZ_09681 [Jatropha curcas]
9 Hb_002205_200 0.2690575697 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
10 Hb_000931_030 0.2775768725 - - PREDICTED: uncharacterized protein LOC105130278 [Populus euphratica]
11 Hb_000707_070 0.285928507 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like isoform X1 [Populus euphratica]
12 Hb_126112_010 0.2930767295 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
13 Hb_001095_060 0.2931899282 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
14 Hb_000523_100 0.3033540077 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
15 Hb_047091_010 0.3082477455 - - GABA-specific permease, putative [Ricinus communis]
16 Hb_116681_010 0.3096863215 - - hypothetical protein PRUPE_ppa025968mg, partial [Prunus persica]
17 Hb_001230_010 0.3103043841 - - -
18 Hb_174107_010 0.3118447098 - - PREDICTED: uncharacterized protein LOC105775323 [Gossypium raimondii]
19 Hb_145827_010 0.3144333792 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
20 Hb_115919_010 0.3152202136 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_144101_010 Hb_144101_010 Hb_021888_110 Hb_021888_110 Hb_144101_010--Hb_021888_110 Hb_029162_020 Hb_029162_020 Hb_144101_010--Hb_029162_020 Hb_048610_010 Hb_048610_010 Hb_144101_010--Hb_048610_010 Hb_036285_010 Hb_036285_010 Hb_144101_010--Hb_036285_010 Hb_000025_100 Hb_000025_100 Hb_144101_010--Hb_000025_100 Hb_000025_060 Hb_000025_060 Hb_144101_010--Hb_000025_060 Hb_126112_010 Hb_126112_010 Hb_021888_110--Hb_126112_010 Hb_115919_010 Hb_115919_010 Hb_021888_110--Hb_115919_010 Hb_021888_110--Hb_000025_100 Hb_001095_060 Hb_001095_060 Hb_021888_110--Hb_001095_060 Hb_121236_010 Hb_121236_010 Hb_021888_110--Hb_121236_010 Hb_029162_020--Hb_048610_010 Hb_001230_010 Hb_001230_010 Hb_029162_020--Hb_001230_010 Hb_031862_050 Hb_031862_050 Hb_029162_020--Hb_031862_050 Hb_002007_290 Hb_002007_290 Hb_029162_020--Hb_002007_290 Hb_168418_010 Hb_168418_010 Hb_029162_020--Hb_168418_010 Hb_048610_010--Hb_001230_010 Hb_048610_010--Hb_002007_290 Hb_048610_010--Hb_031862_050 Hb_048610_010--Hb_168418_010 Hb_002205_200 Hb_002205_200 Hb_036285_010--Hb_002205_200 Hb_010588_010 Hb_010588_010 Hb_036285_010--Hb_010588_010 Hb_174107_010 Hb_174107_010 Hb_036285_010--Hb_174107_010 Hb_166548_010 Hb_166548_010 Hb_036285_010--Hb_166548_010 Hb_001981_080 Hb_001981_080 Hb_036285_010--Hb_001981_080 Hb_036285_010--Hb_021888_110 Hb_000025_100--Hb_126112_010 Hb_121550_010 Hb_121550_010 Hb_000025_100--Hb_121550_010 Hb_008442_010 Hb_008442_010 Hb_000025_100--Hb_008442_010 Hb_147123_010 Hb_147123_010 Hb_000025_100--Hb_147123_010 Hb_071923_010 Hb_071923_010 Hb_000025_100--Hb_071923_010 Hb_007508_040 Hb_007508_040 Hb_000025_060--Hb_007508_040 Hb_156526_010 Hb_156526_010 Hb_000025_060--Hb_156526_010 Hb_000025_060--Hb_126112_010 Hb_002045_140 Hb_002045_140 Hb_000025_060--Hb_002045_140 Hb_000025_060--Hb_021888_110 Hb_000523_100 Hb_000523_100 Hb_000025_060--Hb_000523_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71088 0.0748912 0 0.226753 0 3.00299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.717504 0.563884 0 0 0

CAGE analysis