Hb_007792_010

Information

Type -
Description -
Location Contig7792: 8803-11636
Sequence    

Annotation

kegg
ID brp:103833451
description cold shock protein 1-like
nr
ID XP_012453109.1
description PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NCV8
description Gag-Pol polyprotein OS=Gossypium arboreum GN=F383_03268 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007792_010 0.0 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
2 Hb_001741_050 0.2997823287 - - -
3 Hb_153231_040 0.2998104276 - - -
4 Hb_002231_050 0.3084448724 - - -
5 Hb_002307_130 0.3089600246 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005496_060 0.3092281731 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
7 Hb_001195_590 0.3130684261 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
8 Hb_022212_010 0.3132258764 - - -
9 Hb_011401_010 0.3173549425 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
10 Hb_001722_030 0.3188953819 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105123768 isoform X2 [Populus euphratica]
11 Hb_002135_040 0.3222648308 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
12 Hb_000172_610 0.3232139317 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
13 Hb_126669_010 0.3247569896 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
14 Hb_000340_480 0.3250991817 - - -
15 Hb_000928_230 0.3286376679 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000613_200 0.3310861827 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
17 Hb_010504_010 0.3312228881 - - 40S ribosomal protein S15C [Hevea brasiliensis]
18 Hb_005298_050 0.3362920718 - - Integrase core domain, putative [Oryza sativa Japonica Group]
19 Hb_089140_080 0.3368458037 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
20 Hb_019516_040 0.3372527737 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_007792_010 Hb_007792_010 Hb_001741_050 Hb_001741_050 Hb_007792_010--Hb_001741_050 Hb_153231_040 Hb_153231_040 Hb_007792_010--Hb_153231_040 Hb_002231_050 Hb_002231_050 Hb_007792_010--Hb_002231_050 Hb_002307_130 Hb_002307_130 Hb_007792_010--Hb_002307_130 Hb_005496_060 Hb_005496_060 Hb_007792_010--Hb_005496_060 Hb_001195_590 Hb_001195_590 Hb_007792_010--Hb_001195_590 Hb_000329_530 Hb_000329_530 Hb_001741_050--Hb_000329_530 Hb_001741_050--Hb_001195_590 Hb_178345_010 Hb_178345_010 Hb_001741_050--Hb_178345_010 Hb_004449_010 Hb_004449_010 Hb_001741_050--Hb_004449_010 Hb_012395_100 Hb_012395_100 Hb_001741_050--Hb_012395_100 Hb_000046_020 Hb_000046_020 Hb_001741_050--Hb_000046_020 Hb_010504_010 Hb_010504_010 Hb_153231_040--Hb_010504_010 Hb_022212_010 Hb_022212_010 Hb_153231_040--Hb_022212_010 Hb_002239_010 Hb_002239_010 Hb_153231_040--Hb_002239_010 Hb_000350_110 Hb_000350_110 Hb_153231_040--Hb_000350_110 Hb_001863_060 Hb_001863_060 Hb_153231_040--Hb_001863_060 Hb_011401_010 Hb_011401_010 Hb_002231_050--Hb_011401_010 Hb_001722_030 Hb_001722_030 Hb_002231_050--Hb_001722_030 Hb_106159_010 Hb_106159_010 Hb_002231_050--Hb_106159_010 Hb_002928_100 Hb_002928_100 Hb_002231_050--Hb_002928_100 Hb_115784_010 Hb_115784_010 Hb_002231_050--Hb_115784_010 Hb_002307_130--Hb_010504_010 Hb_002307_130--Hb_000350_110 Hb_040562_010 Hb_040562_010 Hb_002307_130--Hb_040562_010 Hb_003108_010 Hb_003108_010 Hb_002307_130--Hb_003108_010 Hb_002307_130--Hb_002239_010 Hb_002835_190 Hb_002835_190 Hb_005496_060--Hb_002835_190 Hb_006557_010 Hb_006557_010 Hb_005496_060--Hb_006557_010 Hb_004657_010 Hb_004657_010 Hb_005496_060--Hb_004657_010 Hb_000340_480 Hb_000340_480 Hb_005496_060--Hb_000340_480 Hb_002374_340 Hb_002374_340 Hb_005496_060--Hb_002374_340 Hb_000753_260 Hb_000753_260 Hb_005496_060--Hb_000753_260 Hb_000088_060 Hb_000088_060 Hb_001195_590--Hb_000088_060 Hb_005590_030 Hb_005590_030 Hb_001195_590--Hb_005590_030 Hb_001195_580 Hb_001195_580 Hb_001195_590--Hb_001195_580 Hb_001195_590--Hb_006557_010 Hb_089140_080 Hb_089140_080 Hb_001195_590--Hb_089140_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.045091 0 0 0 0.0335353 0.0317036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0825462 0 0 0 0

CAGE analysis