Hb_001863_060

Information

Type -
Description -
Location Contig1863: 35894-37642
Sequence    

Annotation

kegg
ID pop:POPTR_0005s13815g
description hypothetical protein
nr
ID ABB83644.1
description PIF-like transposase [Daucus carota]
swissprot
ID -
description -
trembl
ID Q1WIR8
description PIF-like transposase OS=Daucus carota PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_060 0.0 - - PIF-like transposase [Daucus carota]
2 Hb_000350_110 0.1258828006 - - PREDICTED: uncharacterized protein LOC104220461 isoform X2 [Nicotiana sylvestris]
3 Hb_009777_010 0.2254706343 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
4 Hb_022212_010 0.2822610296 - - -
5 Hb_153231_040 0.2873380527 - - -
6 Hb_004297_060 0.3076862236 - - Cucumisin protein [Theobroma cacao]
7 Hb_148908_020 0.3080771184 - - -
8 Hb_002239_010 0.3205242172 - - -
9 Hb_010504_010 0.3270644386 - - 40S ribosomal protein S15C [Hevea brasiliensis]
10 Hb_002307_130 0.3444189582 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001437_290 0.3451034766 - - -
12 Hb_000608_130 0.3787911006 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_000538_150 0.3825844016 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
14 Hb_000614_330 0.384445904 - - hypothetical protein POPTR_0008s18070g [Populus trichocarpa]
15 Hb_007792_010 0.3893295293 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
16 Hb_166511_010 0.3906507091 - - -
17 Hb_011037_010 0.4038760677 - - PREDICTED: uncharacterized protein LOC105778976 [Gossypium raimondii]
18 Hb_003058_050 0.4038905401 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_002099_020 0.4039179123 - - cysteine proteinase inhibitor-like [Jatropha curcas]
20 Hb_000205_170 0.4068749221 - - PREDICTED: uncharacterized protein LOC103926801 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001863_060 Hb_001863_060 Hb_000350_110 Hb_000350_110 Hb_001863_060--Hb_000350_110 Hb_009777_010 Hb_009777_010 Hb_001863_060--Hb_009777_010 Hb_022212_010 Hb_022212_010 Hb_001863_060--Hb_022212_010 Hb_153231_040 Hb_153231_040 Hb_001863_060--Hb_153231_040 Hb_004297_060 Hb_004297_060 Hb_001863_060--Hb_004297_060 Hb_148908_020 Hb_148908_020 Hb_001863_060--Hb_148908_020 Hb_000350_110--Hb_153231_040 Hb_002307_130 Hb_002307_130 Hb_000350_110--Hb_002307_130 Hb_010504_010 Hb_010504_010 Hb_000350_110--Hb_010504_010 Hb_000350_110--Hb_022212_010 Hb_000350_110--Hb_148908_020 Hb_001437_290 Hb_001437_290 Hb_009777_010--Hb_001437_290 Hb_166511_010 Hb_166511_010 Hb_009777_010--Hb_166511_010 Hb_001135_230 Hb_001135_230 Hb_009777_010--Hb_001135_230 Hb_000614_330 Hb_000614_330 Hb_009777_010--Hb_000614_330 Hb_012404_030 Hb_012404_030 Hb_009777_010--Hb_012404_030 Hb_022212_010--Hb_153231_040 Hb_076693_010 Hb_076693_010 Hb_022212_010--Hb_076693_010 Hb_011707_010 Hb_011707_010 Hb_022212_010--Hb_011707_010 Hb_092027_010 Hb_092027_010 Hb_022212_010--Hb_092027_010 Hb_008031_020 Hb_008031_020 Hb_022212_010--Hb_008031_020 Hb_001831_020 Hb_001831_020 Hb_022212_010--Hb_001831_020 Hb_153231_040--Hb_010504_010 Hb_002239_010 Hb_002239_010 Hb_153231_040--Hb_002239_010 Hb_007792_010 Hb_007792_010 Hb_153231_040--Hb_007792_010 Hb_004297_060--Hb_148908_020 Hb_000608_130 Hb_000608_130 Hb_004297_060--Hb_000608_130 Hb_004297_060--Hb_001437_290 Hb_000080_050 Hb_000080_050 Hb_004297_060--Hb_000080_050 Hb_004297_060--Hb_011707_010 Hb_004297_060--Hb_076693_010 Hb_148908_020--Hb_000608_130 Hb_148908_020--Hb_001437_290 Hb_148908_020--Hb_000080_050 Hb_082730_010 Hb_082730_010 Hb_148908_020--Hb_082730_010 Hb_094245_010 Hb_094245_010 Hb_148908_020--Hb_094245_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.123707 0 0 0 0.0624171 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.14517 0 0 0.0476312 0

CAGE analysis