Hb_000614_330

Information

Type -
Description -
Location Contig614: 237599-238909
Sequence    

Annotation

kegg
ID pop:POPTR_0008s18070g
description POPTRDRAFT_657422; hypothetical protein
nr
ID XP_002311734.1
description hypothetical protein POPTR_0008s18070g [Populus trichocarpa]
swissprot
ID Q70PR7
description Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2
trembl
ID B9HLB1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s18070g PE=4 SV=1
Gene Ontology
ID GO:0016746
description bahd acyltransferase at5g47980-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000614_330 0.0 - - hypothetical protein POPTR_0008s18070g [Populus trichocarpa]
2 Hb_027751_030 0.2391037443 - - -
3 Hb_002843_190 0.2397837543 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 7 isoform X1 [Jatropha curcas]
4 Hb_027751_040 0.2483170864 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
5 Hb_000538_150 0.2498260473 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
6 Hb_000284_160 0.2578513535 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
7 Hb_026766_010 0.2582185364 - - -
8 Hb_002094_020 0.2705076221 - - PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
9 Hb_003992_120 0.2788274098 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
10 Hb_003745_010 0.2890336289 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
11 Hb_000603_240 0.2986546627 - - -
12 Hb_010128_110 0.303690882 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
13 Hb_000959_360 0.3170221943 - - transporter, putative [Ricinus communis]
14 Hb_009777_010 0.3190729749 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
15 Hb_001135_230 0.3212646166 - - PREDICTED: protein REVEILLE 6-like isoform X3 [Gossypium raimondii]
16 Hb_022212_010 0.3229364378 - - -
17 Hb_001993_020 0.3297181118 - - hypothetical protein JCGZ_02641 [Jatropha curcas]
18 Hb_000205_170 0.3299803948 - - PREDICTED: uncharacterized protein LOC103926801 [Pyrus x bretschneideri]
19 Hb_012662_010 0.3318745334 - - hypothetical protein JCGZ_06358 [Jatropha curcas]
20 Hb_000928_230 0.333257637 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000614_330 Hb_000614_330 Hb_027751_030 Hb_027751_030 Hb_000614_330--Hb_027751_030 Hb_002843_190 Hb_002843_190 Hb_000614_330--Hb_002843_190 Hb_027751_040 Hb_027751_040 Hb_000614_330--Hb_027751_040 Hb_000538_150 Hb_000538_150 Hb_000614_330--Hb_000538_150 Hb_000284_160 Hb_000284_160 Hb_000614_330--Hb_000284_160 Hb_026766_010 Hb_026766_010 Hb_000614_330--Hb_026766_010 Hb_027751_030--Hb_027751_040 Hb_027751_030--Hb_002843_190 Hb_002094_020 Hb_002094_020 Hb_027751_030--Hb_002094_020 Hb_027751_030--Hb_000284_160 Hb_027751_030--Hb_026766_010 Hb_001230_010 Hb_001230_010 Hb_027751_030--Hb_001230_010 Hb_028365_010 Hb_028365_010 Hb_002843_190--Hb_028365_010 Hb_002843_190--Hb_027751_040 Hb_010128_110 Hb_010128_110 Hb_002843_190--Hb_010128_110 Hb_003992_120 Hb_003992_120 Hb_002843_190--Hb_003992_120 Hb_001980_020 Hb_001980_020 Hb_002843_190--Hb_001980_020 Hb_003745_010 Hb_003745_010 Hb_027751_040--Hb_003745_010 Hb_012662_010 Hb_012662_010 Hb_027751_040--Hb_012662_010 Hb_001993_020 Hb_001993_020 Hb_027751_040--Hb_001993_020 Hb_003756_010 Hb_003756_010 Hb_027751_040--Hb_003756_010 Hb_007044_210 Hb_007044_210 Hb_000538_150--Hb_007044_210 Hb_027380_040 Hb_027380_040 Hb_000538_150--Hb_027380_040 Hb_000613_200 Hb_000613_200 Hb_000538_150--Hb_000613_200 Hb_005298_040 Hb_005298_040 Hb_000538_150--Hb_005298_040 Hb_005545_030 Hb_005545_030 Hb_000538_150--Hb_005545_030 Hb_000603_240 Hb_000603_240 Hb_000284_160--Hb_000603_240 Hb_000284_160--Hb_026766_010 Hb_000284_160--Hb_027751_040 Hb_000284_160--Hb_001993_020 Hb_026766_010--Hb_003992_120 Hb_004584_010 Hb_004584_010 Hb_026766_010--Hb_004584_010 Hb_026766_010--Hb_000603_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17872 0.0159702 0 0 0.182073 0.0799027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.730553 0.11494 0 0 0.0597467

CAGE analysis