Hb_005298_040

Information

Type -
Description -
Location Contig5298: 50070-50928
Sequence    

Annotation

kegg
ID cic:CICLE_v10003181mg
description hypothetical protein
nr
ID XP_006431874.1
description hypothetical protein CICLE_v10003181mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4V054
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003181mg PE=4 SV=1
Gene Ontology
ID GO:0046983
description caffeic acid o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005298_040 0.0 - - hypothetical protein CICLE_v10003181mg, partial [Citrus clementina]
2 Hb_005298_050 0.24196484 - - Integrase core domain, putative [Oryza sativa Japonica Group]
3 Hb_000139_330 0.2521719569 - - short chain dehydrogenase, putative [Ricinus communis]
4 Hb_000705_300 0.2658515681 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
5 Hb_024399_030 0.2763546594 - - conserved hypothetical protein [Ricinus communis]
6 Hb_113739_010 0.2775337755 - - hypothetical protein JCGZ_06379 [Jatropha curcas]
7 Hb_000538_150 0.2790862005 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
8 Hb_007044_210 0.2835739169 transcription factor TF Family: MYB PREDICTED: protein rough sheath 2 homolog [Populus euphratica]
9 Hb_001195_580 0.2861371833 - - hypothetical protein POPTR_0014s04130g [Populus trichocarpa]
10 Hb_000373_290 0.2875047554 - - RecName: Full=Citrate-binding protein; Flags: Precursor [Hevea brasiliensis]
11 Hb_000445_330 0.2932716048 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000032_240 0.2935751483 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000548_030 0.2972545033 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
14 Hb_003304_050 0.2981479124 - - PREDICTED: uncharacterized protein LOC105633679 isoform X1 [Jatropha curcas]
15 Hb_005271_020 0.3098194865 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
16 Hb_002603_130 0.3103098641 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
17 Hb_002228_100 0.3116446211 - - calcineurin-like phosphoesterase [Manihot esculenta]
18 Hb_173902_040 0.3165373868 - - -
19 Hb_000641_030 0.3178017582 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
20 Hb_074197_010 0.3184944934 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005298_040 Hb_005298_040 Hb_005298_050 Hb_005298_050 Hb_005298_040--Hb_005298_050 Hb_000139_330 Hb_000139_330 Hb_005298_040--Hb_000139_330 Hb_000705_300 Hb_000705_300 Hb_005298_040--Hb_000705_300 Hb_024399_030 Hb_024399_030 Hb_005298_040--Hb_024399_030 Hb_113739_010 Hb_113739_010 Hb_005298_040--Hb_113739_010 Hb_000538_150 Hb_000538_150 Hb_005298_040--Hb_000538_150 Hb_005298_050--Hb_000139_330 Hb_003304_050 Hb_003304_050 Hb_005298_050--Hb_003304_050 Hb_005298_050--Hb_113739_010 Hb_007792_010 Hb_007792_010 Hb_005298_050--Hb_007792_010 Hb_005298_050--Hb_000705_300 Hb_004032_440 Hb_004032_440 Hb_000139_330--Hb_004032_440 Hb_006501_110 Hb_006501_110 Hb_000139_330--Hb_006501_110 Hb_002876_030 Hb_002876_030 Hb_000139_330--Hb_002876_030 Hb_000548_030 Hb_000548_030 Hb_000139_330--Hb_000548_030 Hb_023988_020 Hb_023988_020 Hb_000139_330--Hb_023988_020 Hb_002603_130 Hb_002603_130 Hb_000139_330--Hb_002603_130 Hb_000331_290 Hb_000331_290 Hb_000705_300--Hb_000331_290 Hb_000705_300--Hb_006501_110 Hb_000390_200 Hb_000390_200 Hb_000705_300--Hb_000390_200 Hb_006096_040 Hb_006096_040 Hb_000705_300--Hb_006096_040 Hb_003371_180 Hb_003371_180 Hb_000705_300--Hb_003371_180 Hb_000705_300--Hb_000139_330 Hb_001417_080 Hb_001417_080 Hb_024399_030--Hb_001417_080 Hb_000445_190 Hb_000445_190 Hb_024399_030--Hb_000445_190 Hb_002893_120 Hb_002893_120 Hb_024399_030--Hb_002893_120 Hb_007809_090 Hb_007809_090 Hb_024399_030--Hb_007809_090 Hb_000108_100 Hb_000108_100 Hb_024399_030--Hb_000108_100 Hb_000137_070 Hb_000137_070 Hb_113739_010--Hb_000137_070 Hb_182516_010 Hb_182516_010 Hb_113739_010--Hb_182516_010 Hb_113739_010--Hb_000390_200 Hb_068804_150 Hb_068804_150 Hb_113739_010--Hb_068804_150 Hb_113739_010--Hb_000139_330 Hb_113739_010--Hb_002603_130 Hb_000614_330 Hb_000614_330 Hb_000538_150--Hb_000614_330 Hb_007044_210 Hb_007044_210 Hb_000538_150--Hb_007044_210 Hb_027380_040 Hb_027380_040 Hb_000538_150--Hb_027380_040 Hb_000613_200 Hb_000613_200 Hb_000538_150--Hb_000613_200 Hb_005545_030 Hb_005545_030 Hb_000538_150--Hb_005545_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5447 0.959866 2.69811 11.7396 12.4988 1.79984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.8216 4.21624 0.152015 0 0

CAGE analysis