Hb_024399_030

Information

Type -
Description -
Location Contig24399: 19055-22441
Sequence    

Annotation

kegg
ID rcu:RCOM_1324340
description hypothetical protein
nr
ID XP_002520002.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1Y3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1324340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024399_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005298_040 0.2763546594 - - hypothetical protein CICLE_v10003181mg, partial [Citrus clementina]
3 Hb_001417_080 0.2806203785 - - Calmodulin, putative [Ricinus communis]
4 Hb_000445_190 0.295605957 - - -
5 Hb_002893_120 0.2962558108 - - PREDICTED: uncharacterized protein LOC105637692 [Jatropha curcas]
6 Hb_007809_090 0.2976207808 - - protease inhibitor protein [Hevea brasiliensis]
7 Hb_000108_100 0.2991607164 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X2 [Jatropha curcas]
8 Hb_074197_010 0.3105757325 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
9 Hb_005736_040 0.313095388 - - -
10 Hb_000032_240 0.3159552075 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000922_180 0.3166544444 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
12 Hb_004374_180 0.3172768097 - - GMP synthase, putative [Ricinus communis]
13 Hb_001017_080 0.3199650216 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
14 Hb_148891_010 0.3202465144 - - -
15 Hb_000207_380 0.32760015 - - sucrose transporter 6 [Hevea brasiliensis]
16 Hb_065642_010 0.3320760392 - - -
17 Hb_000099_230 0.3335521441 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
18 Hb_000445_330 0.3362103227 - - conserved hypothetical protein [Ricinus communis]
19 Hb_032974_010 0.3368349097 - - -
20 Hb_001427_140 0.3401999575 - - PREDICTED: probable phospholipase A2 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_024399_030 Hb_024399_030 Hb_005298_040 Hb_005298_040 Hb_024399_030--Hb_005298_040 Hb_001417_080 Hb_001417_080 Hb_024399_030--Hb_001417_080 Hb_000445_190 Hb_000445_190 Hb_024399_030--Hb_000445_190 Hb_002893_120 Hb_002893_120 Hb_024399_030--Hb_002893_120 Hb_007809_090 Hb_007809_090 Hb_024399_030--Hb_007809_090 Hb_000108_100 Hb_000108_100 Hb_024399_030--Hb_000108_100 Hb_005298_050 Hb_005298_050 Hb_005298_040--Hb_005298_050 Hb_000139_330 Hb_000139_330 Hb_005298_040--Hb_000139_330 Hb_000705_300 Hb_000705_300 Hb_005298_040--Hb_000705_300 Hb_113739_010 Hb_113739_010 Hb_005298_040--Hb_113739_010 Hb_000538_150 Hb_000538_150 Hb_005298_040--Hb_000538_150 Hb_000329_260 Hb_000329_260 Hb_001417_080--Hb_000329_260 Hb_033870_010 Hb_033870_010 Hb_001417_080--Hb_033870_010 Hb_010812_090 Hb_010812_090 Hb_001417_080--Hb_010812_090 Hb_002259_050 Hb_002259_050 Hb_001417_080--Hb_002259_050 Hb_002299_020 Hb_002299_020 Hb_001417_080--Hb_002299_020 Hb_148891_010 Hb_148891_010 Hb_000445_190--Hb_148891_010 Hb_069022_010 Hb_069022_010 Hb_000445_190--Hb_069022_010 Hb_000099_230 Hb_000099_230 Hb_000445_190--Hb_000099_230 Hb_001017_080 Hb_001017_080 Hb_000445_190--Hb_001017_080 Hb_005714_050 Hb_005714_050 Hb_000445_190--Hb_005714_050 Hb_032974_010 Hb_032974_010 Hb_000445_190--Hb_032974_010 Hb_000207_380 Hb_000207_380 Hb_002893_120--Hb_000207_380 Hb_032208_070 Hb_032208_070 Hb_002893_120--Hb_032208_070 Hb_014783_010 Hb_014783_010 Hb_002893_120--Hb_014783_010 Hb_000224_200 Hb_000224_200 Hb_002893_120--Hb_000224_200 Hb_164926_020 Hb_164926_020 Hb_002893_120--Hb_164926_020 Hb_003371_180 Hb_003371_180 Hb_002893_120--Hb_003371_180 Hb_000559_080 Hb_000559_080 Hb_007809_090--Hb_000559_080 Hb_159191_010 Hb_159191_010 Hb_007809_090--Hb_159191_010 Hb_007120_070 Hb_007120_070 Hb_007809_090--Hb_007120_070 Hb_003020_310 Hb_003020_310 Hb_007809_090--Hb_003020_310 Hb_007416_220 Hb_007416_220 Hb_007809_090--Hb_007416_220 Hb_001799_040 Hb_001799_040 Hb_007809_090--Hb_001799_040 Hb_000326_070 Hb_000326_070 Hb_000108_100--Hb_000326_070 Hb_000442_090 Hb_000442_090 Hb_000108_100--Hb_000442_090 Hb_019516_020 Hb_019516_020 Hb_000108_100--Hb_019516_020 Hb_116420_030 Hb_116420_030 Hb_000108_100--Hb_116420_030 Hb_009393_190 Hb_009393_190 Hb_000108_100--Hb_009393_190 Hb_000092_130 Hb_000092_130 Hb_000108_100--Hb_000092_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.61032 0 0.162351 0.253753 0.134627 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.941019 0.492775 0 0 0

CAGE analysis